Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software
Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.
The recipe lets you segment small features on images with non-uniform illumination and low contrast.Learn more
Tortuosity is a key factor for material characterization of porous media. This package propose 4 methods to calculate the tortuosity factor based on the xlab properties: Absolute Permeability, Molecular Diffusion, Formation Factor and Thermal Conductivity.Learn more
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
This tutorial demonstrates the steps to quantify porosity distribution and the distance to surface analysis.Learn more
Process all files in a folder by applying the same recipe to all of them individually.Learn more
Python (pyscro), Project (hx, pgo), Data
In this pyscro example we use opencv and matplotlib to automatically calculate an optimized parameter for thresholding the data based on various metrics.Learn more
This script simply reads and loads numpy arrays in a user specified directory into PerGeos/Amira-Avizo as an image.Learn more