Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software
Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.
Tcl
14 Oct 2019 - This module allows storing and retrieving camera settings for viewer windows to be able to switch easily between different view presets.
Recipe (hxrecipe), XPand module, Data
14 Oct 2019 - Module for sequencing a recipe on each individual isolated label from a label field.
Berea Pore Size Distribution Tutorial
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
11 Oct 2019 - Create a semi-automatic workflow for Pore Size Distribution on Berea sandstone
Tutorial: Generate a DVC mesh of complex shapes
Demo, Data
10 Oct 2019 - This tutorial describes how to build a DVC mesh for specimens with complex shapes.
Parameter optimization for auto-thresholding a data
Python (pyscro), Project (hx, pgo), Data
7 Oct 2019 - In this pyscro example we use opencv and matplotlib to automatically calculate an optimized parameter for thresholding the data based on various metrics.
How to use PyQt5 in a pyscro module
Python (pyscro)
7 Oct 2019 - This example shows how to use PyQt5 in a pyscro module.
Python (pyscro)
3 Oct 2019 - This module allows the user to convert a scalar/vector/tensor field into a spreadsheet containing the X,Y,Z positions and the values of the field.
Python (pyscro)
3 Oct 2019 - This module extracts the displacement and strain components computed using the Digital Volume Correlation module.
Python (pyscro)
3 Oct 2019 - Perform incremental DVC analysis for a series of deformed image, using either small strain or large strain approaches (note: to run correctly the Green Lagrange strain script needs to be installed).
Python (pyscro)
3 Oct 2019 - This module allows the user to measure the displacement and strain errors from two repeat scans.
How to use deep learning models in AmiraAvizo2D Analyzer
Recipe ISP (hxisp,a2d), Deep learning model, Data
3 Oct 2019 - Examples showing how to use AI (deep learning models) in an Analyzer recipe (hxisp)
Recipe ISP (hxisp,a2d), Demo, Data
18 Sep 2019 - Batch processing of a subset of porous silicon SEM images.
Getting Started with Deep Learning Training
Deep learning model, Data
5 Sep 2019 - Model and companion project for the Deep Learning tutorial.
Recipe ISP (hxisp,a2d), Data
24 Jul 2019 - Alpha, Borides, Beta segmentation of FIB Serial Section Dataset of Ti Alloy with Borides
Recipe ISP (hxisp,a2d), Data
24 Jul 2019 - FIB Serial Section of Ti-62222
Particles identification in Nickel-Base Superalloy
Recipe ISP (hxisp,a2d), Python (pyscro), Data
24 Jul 2019 - FIB Serial Section of Particles in Nickel-Base Superalloy
Getting Started with Deep Learning Training (Membrane Segmentation)
Deep learning model, Project (hx, pgo), Data
27 Jun 2019 - Model and companion project for the Deep Learning tutorial.
Size distribution of Nb-Cu nanoparticles
Recipe ISP (hxisp,a2d), Demo, Data
26 Jun 2019 - The recipe segments the Nb particles and the Cu particles.
Recipe ISP (hxisp,a2d), Demo, Data
26 Jun 2019 - The recipe detects pores in a porous silicon.
Porosity in a battery separator
Recipe ISP (hxisp,a2d), Demo, Data
26 Jun 2019 - The recipe classifies the pores in a battery separator (SEM image).
Recipe ISP (hxisp,a2d), Demo, Data
26 Jun 2019 - The recipe detects pores in a polymer divider (SEM image).