Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software

Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.

View Manager

View Manager

Tcl

14 Oct 2019 - This module allows storing and retrieving camera settings for viewer windows to be able to switch easily between different view presets.

Recipe Sequencer

Recipe Sequencer

Recipe (hxrecipe), XPand module, Data

14 Oct 2019 - Module for sequencing a recipe on each individual isolated label from a label field.

Berea Pore Size Distribution Tutorial

Berea Pore Size Distribution Tutorial

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

11 Oct 2019 - Create a semi-automatic workflow for Pore Size Distribution on Berea sandstone

Tutorial: Generate a DVC mesh of complex shapes

Tutorial: Generate a DVC mesh of complex shapes

Demo, Data

10 Oct 2019 - This tutorial describes how to build a DVC mesh for specimens with complex shapes.

Parameter optimization for auto-thresholding a data

Parameter optimization for auto-thresholding a data

Python (pyscro), Project (hx, pgo), Data

7 Oct 2019 - In this pyscro example we use opencv and matplotlib to automatically calculate an optimized parameter for thresholding the data based on various metrics.

How to use PyQt5 in a pyscro module

How to use PyQt5 in a pyscro module

Python (pyscro)

7 Oct 2019 - This example shows how to use PyQt5 in a pyscro module.

Convert To Spreadsheet

Convert To Spreadsheet

Python (pyscro)

3 Oct 2019 - This module allows the user to convert a scalar/vector/tensor field into a spreadsheet containing the X,Y,Z positions and the values of the field.

Scalar Extract

Scalar Extract

Python (pyscro)

3 Oct 2019 - This module extracts the displacement and strain components computed using the Digital Volume Correlation module.

Incremental Global DVC

Incremental Global DVC

Python (pyscro)

3 Oct 2019 - Perform incremental DVC analysis for a series of deformed image, using either small strain or large strain approaches (note: to run correctly the Green Lagrange strain script needs to be installed).

DVC Accuracy

DVC Accuracy

Python (pyscro)

3 Oct 2019 - This module allows the user to measure the displacement and strain errors from two repeat scans.

How to use deep learning models in AmiraAvizo2D Analyzer

How to use deep learning models in AmiraAvizo2D Analyzer

Recipe ISP (hxisp,a2d), Deep learning model, Data

3 Oct 2019 - Examples showing how to use AI (deep learning models) in an Analyzer recipe (hxisp)

Porous Silicon Batch

Porous Silicon Batch

Recipe ISP (hxisp,a2d), Demo, Data

18 Sep 2019 - Batch processing of a subset of porous silicon SEM images.

Getting Started with Deep Learning Training

Getting Started with Deep Learning Training

Deep learning model, Data

5 Sep 2019 - Model and companion project for the Deep Learning tutorial.

Three Phase Ti Segmentation

Three Phase Ti Segmentation

Recipe ISP (hxisp,a2d), Data

24 Jul 2019 - Alpha, Borides, Beta segmentation of FIB Serial Section Dataset of Ti Alloy with Borides

Plates in Ti-62222

Plates in Ti-62222

Recipe ISP (hxisp,a2d), Data

24 Jul 2019 - FIB Serial Section of Ti-62222

Particles identification in Nickel-Base Superalloy

Particles identification in Nickel-Base Superalloy

Recipe ISP (hxisp,a2d), Python (pyscro), Data

24 Jul 2019 - FIB Serial Section of Particles in Nickel-Base Superalloy

Getting Started with Deep Learning Training (Membrane Segmentation)

Getting Started with Deep Learning Training (Membrane Segmentation)

Deep learning model, Project (hx, pgo), Data

27 Jun 2019 - Model and companion project for the Deep Learning tutorial.

Size distribution of Nb-Cu nanoparticles

Size distribution of Nb-Cu nanoparticles

Recipe ISP (hxisp,a2d), Demo, Data

26 Jun 2019 - The recipe segments the Nb particles and the Cu particles.

Porous silicon

Porous silicon

Recipe ISP (hxisp,a2d), Demo, Data

26 Jun 2019 - The recipe detects pores in a porous silicon.

Porosity in a battery separator

Porosity in a battery separator

Recipe ISP (hxisp,a2d), Demo, Data

26 Jun 2019 - The recipe classifies the pores in a battery separator (SEM image).

Porosity in a polymer divider

Porosity in a polymer divider

Recipe ISP (hxisp,a2d), Demo, Data

26 Jun 2019 - The recipe detects pores in a polymer divider (SEM image).