Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software

Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.

How to use deep learning models in AmiraAvizo2D Analyzer

How to use deep learning models in AmiraAvizo2D Analyzer

Recipe ISP (hxisp,a2d), Deep learning model, Data

Examples showing how to use AI (deep learning models) in an Analyzer recipe (hxisp)

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2D SEM  (White) Grain Segmentation

2D SEM (White) Grain Segmentation

Recipe (hxrecipe), Data

This recipe segments and calculate the physical attributes of the white grains in the 2D SEM image

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Random Forests for Multiclass Segmentation using Python API in PerGeos

Random Forests for Multiclass Segmentation using Python API in PerGeos

Python (pyscro), Project (hx, pgo), Data

Simple demonstration of feature computation where the feature vector contains intensity and 2D eigenvalues (X & Y). This example uses random forests implementation from the sklearn package.

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Getting Started with Deep Learning Training (Membrane Segmentation)

Getting Started with Deep Learning Training (Membrane Segmentation)

Deep learning model, Project (hx, pgo), Data

Model and companion project for the Deep Learning tutorial.

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Getting Started with Deep Learning Training

Getting Started with Deep Learning Training

Deep learning model, Data

Model and companion project for the Deep Learning tutorial.

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