Non-Standard Python Package Installation Tutorial
How-to

Non-Standard Python Package Installation Tutorial

Demo, Misc

13 Jan 2021 - This Xtra provides a brief video that explains how to install a Python package in a newly created Python environment using pip or edm.  Learn more

FIBSEM Mitochondria Segmentation
Add-on How-to

FIBSEM Mitochondria Segmentation

Deep learning model

12 Jan 2021 - Pre-trained model for the Deep Learning Prediction module detecting mitochondria in a Focused Ion Beam Scanning Electron Microscope (FIBSEM) data set.  Learn more

Multi-Component Analysis of X-ray Computed Tomography Datasets
Add-on How-to

Multi-Component Analysis of X-ray Computed Tomography Datasets

Recipe (hxrecipe), Project (hx, pgo), Demo, Data, Misc

4 Jan 2021 - The following videos and training material detail the steps taken to automate the analysis of multiple parts in a single X-ray CT volume.  Learn more

Analysis of X-ray CT Calibration Spheres using the Metrology Workroom
How-to

Analysis of X-ray CT Calibration Spheres using the Metrology Workroom

Demo, Data, Misc

4 Jan 2021 - This video presents how to use the Metrology workroom to analyze calibration spheres used in X-ray Computed Tomography.  Learn more

Thresholding From Mean
Add-on How-to

Thresholding From Mean

Python (pyscro), Data

4 Jan 2021 - This module performs an adaptive global thresholding of the input image by computing a deviation from the mean of its grayscale values.  Learn more

How to Create and Animate a Camera Path
How-to

How to Create and Animate a Camera Path

Demo

3 Jan 2021 - This tutorial explains how to create a camera path, and then animate the camera along this path with the Animation Director.  Learn more

How to Animate the Appearance of Objects with the Animation Director
How-to

How to Animate the Appearance of Objects with the Animation Director

Demo

3 Jan 2021 - This tutorial explains how to animate the appearance and disappearance of objects with the Animation Director.  Learn more

How to Get Started with the Animation Director
How-to

How to Get Started with the Animation Director

Demo

3 Jan 2021 - This tutorial demonstrates the basic techniques of animation creation with the Animation Director.  Learn more

Export Measures
Add-on

Export Measures

Tcl

17 Nov 2020 - This module creates a spreadsheet that contains the measurement and annotation data (generated with the Measurement tool) that can be used for further analysis.  Learn more

Marker Based Watershed Recipe
Add-on

Marker Based Watershed Recipe

Recipe ISP, IVP, A2D

17 Nov 2020 - A recipe for applying a Marker Based Watershed (as in the Segmentation Editor) from the Project View.  Learn more

Automatic Extraction of Surface Cross Section
Add-on How-to

Automatic Extraction of Surface Cross Section

Python (pyscro), Project (hx, pgo)

20 Oct 2020 - A module for creating partially transparent capping surfaces.  Learn more

Auto Threshold for Multi-Thresholding
Add-on

Auto Threshold for Multi-Thresholding

Tcl

19 Oct 2020 - The combination of Auto Thresholding and Multi-Thresholding makes it easy to create precise surfaces without additional smoothing, using the Generate Surface's smoothing option "Existing Weights".  Learn more

Volume Projection
Add-on

Volume Projection

Python (pyscro)

19 Oct 2020 - This Xtra creates a volume projection along any orthogonal axis using arithmetic operations.  Learn more

Relative Area Fraction for Amira-Avizo2D
Add-on How-to

Relative Area Fraction for Amira-Avizo2D

Recipe ISP, IVP, A2D, Python (pyscro), Data, Misc

5 Oct 2020 - This Xtra provides a module to help compute the area fraction of a label over the area of another label in Amira-Avizo2D.  Learn more

AMIRA_LOCAL Setup Tutorial
How-to

AMIRA_LOCAL Setup Tutorial

Demo

5 Oct 2020 - This Xtra provides a brief video that explains how to set up an AMIRA_LOCAL path on Windows 10.  Learn more

Explode Surface Animation Script
Add-on

Explode Surface Animation Script

Tcl

5 Oct 2020 - A script that will animate the expansion of pieces of a surface. Contains the script, documentation, an example surface, and a video of the finished result.  Learn more

PerGeos Process Based Modelling
Add-on

PerGeos Process Based Modelling

XPand module

4 Sep 2020 - Process Based Modelling modules for PerGeos  Learn more

Apply a Recipe on a Batch of Files
Add-on

Apply a Recipe on a Batch of Files

Recipe (hxrecipe), Tcl

25 Aug 2020 - Apply a recipe to a batch of files and save the results in an output directory.  Learn more

Selective Border Kill
Add-on

Selective Border Kill

Tcl

24 Aug 2020 - A module that allows you to filter particles selectively, based on their contact with each border of the image.  Learn more

2D Cell Tracking Example
Add-on

2D Cell Tracking Example

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

24 Aug 2020 - A 2D cell tracking example from a multichannel time series data set. Contains a segmentation recipe, modules needed to track the cells through time, and a video of the finished result.  Learn more

Segmentation of agglomerated Ni nanoparticles
Add-on

Segmentation of agglomerated Ni nanoparticles

Recipe ISP, IVP, A2D

24 Aug 2020 - This recipe segments overlapping Ni nanoparticles on a high resolution STEM image after which a size distribution of the nanoparticles can also be computed  Learn more