3 Oct 2019

How to use deep learning models in AmiraAvizo2D Analyzer

Examples showing how to use AI (deep learning models) in an Analyzer recipe (hxisp)

These examples show how to use the AI denoiser deep learning model and how to use the membrane segmenter deep learning model in an AmiraAvizo2D analyzer recipe with a deep learning prediction step.

Explanations about how the models are built, are available at:

http://xtras.amira-avizo.com/xtras/getting-started-with-deep-learning-training-membrane-segmentation
http://xtras.amira-avizo.com/xtras/bse-sem-denoiser

Data courtesy of Albert Cardona: Cardona A, et al. 2010. An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy. PLoS Biol 8(10): e1000502. doi:10.1371/journal.pbio.1000502.