Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software

Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.

How to Register and Merge Images NEW
How-to

How to Register and Merge Images

Demo

14 Sep 2021 - This short tutorial demonstrates how to use the Register Images and Merge modules to align and merge two images.

How to Use the Transform Editor NEW
How-to

How to Use the Transform Editor

Demo

14 Sep 2021 - This tutorial introduces the concept of geometric transformation in Amira-Avizo and demonstrates data alignment with the Transform Editor.

How to Create a Custom Label Colormap NEW
How-to

How to Create a Custom Label Colormap

Demo

14 Sep 2021 - This short video explains how to create and export a label colormap from the Segmentation Editor.

How to Change the Label Colormap to Display a Label Field NEW
How-to

How to Change the Label Colormap to Display a Label Field

Demo

14 Sep 2021 - This short video explains how to set an appropriate colormap for label fields with a large number of labels.

How to Edit a Colormap from the Colormap Editor NEW
How-to

How to Edit a Colormap from the Colormap Editor

Demo

14 Sep 2021 - This tutorial demonstrates how to use the Colormap Editor.

How to Save a Project NEW
How-to

How to Save a Project

Demo

14 Sep 2021 - This short tutorial presents the different options to save a project.

Large Data Visualization
Add-on How-to

Large Data Visualization

Demo, Misc

24 Feb 2021 - This video tutorial demonstrates how to deal with visualization of large datasets.

Non-Standard Python Package Installation Tutorial
How-to

Non-Standard Python Package Installation Tutorial

Demo, Misc

13 Jan 2021 - Brief video explaining how to install a Python package in a newly created Python environment using pip or edm.

AMIRA_LOCAL Setup Tutorial
How-to

AMIRA_LOCAL Setup Tutorial

Demo

5 Oct 2020 - Brief video explaining how to set up an AMIRA_LOCAL path on Windows 10.

Berea Pore Size Distribution Tutorial
Add-on How-to

Berea Pore Size Distribution Tutorial

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

11 Oct 2019 - Create a semi-automatic workflow for Pore Size Distribution on Berea sandstone