Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane New
Add-on

Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane

XPand module

26 Jul 2022 - This Xtra provides a set of three modules to compute distance and projection to a user-defined plane.  Learn more

Image Stack Builder New
Add-on

Image Stack Builder

Python (pyscro)

10 Jun 2022 - This module merges together a set of several 2D/3D images into one single volume. It is very helpful for building a 2D image stack from a set of 2D images for ground truth definition.  Learn more

Object Separation using Random-Walk Distance Map New
Add-on

Object Separation using Random-Walk Distance Map

Recipe ISP, IVP, A2D, Demo, Data

3 Jun 2022 - Recipe realizing an object separation workflow relying on Random-Walk Distance Map. It is more robust to noisy segmentation or non-spherical shapes, compared to Separate Object.  Learn more

Create Material IDs New
Add-on

Create Material IDs

Tcl

1 Jun 2022 - Using this module, the "Materials" parameter-bundle of a label-field is created and filled with an ID and name for each label-value.  Learn more

Scientific Scalebar New
Add-on

Scientific Scalebar

Python (pyscro)

13 May 2022 - This Xtra automatically sets the scalebar parameters to comply with the requirements for scientific papers.  Learn more

Scale Axes New
Add-on

Scale Axes

Tcl

13 May 2022 - The coordinate-axes displayed using the "Axes" module cannot be scaled easily. Using this Xtra, you can easily change the lengths of the axes and the location of the displayed origin.  Learn more

High Content Screening Plate Manager New
Add-on

High Content Screening Plate Manager

Python (pyscro), Tcl

13 May 2022 - Load, visualize, and process multi-channel fields from Thermo Scientific CellInsight CX5, CX7 LED, and CX7 LZR HCA instruments and HCS Studio software.  Learn more

Bone Segmentation Workflow for Murine Hindpaw
Add-on How-to

Bone Segmentation Workflow for Murine Hindpaw

Recipe ISP, IVP, A2D, Demo, Data

28 Apr 2022 - Semi-automatic workflow and recipe for high-throughput bone segmentation of murine hindpaw micro-CT datasets.  Learn more

Extract Color Wash Image
Add-on

Extract Color Wash Image

Python (pyscro)

28 Apr 2022 - This module exports an image of color-washed data.  Learn more

Slice by Slice Thinning
Add-on

Slice by Slice Thinning

XPand module

6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice.  Learn more

Slab View
Add-on How-to

Slab View

Python (pyscro), Project (hx, pgo)

24 Feb 2022 - The Slab View display module allows you to display only a slab from any kind of 3D visualization.  Learn more

How to Customize Amira-Avizo with moduleExtender
Add-on How-to

How to Customize Amira-Avizo with moduleExtender

Tcl, Misc

25 Nov 2021 - Are there module settings you always need to change during your daily work? This Xtra describes how you can permanently change default settings of modules in Amira-Avizo.  Learn more

Masking Map by Molecule
Add-on

Masking Map by Molecule

Tcl

18 Nov 2021 - Module Mask Map By Molecule lets you mask an EM map of a macro molecule by an atomic model of the entire or partial molecule. This can be useful when validating EM maps from SPA with published models from the Protein Data Bank.  Learn more

kMeans Clustering on Label Analysis (Python)
Add-on

kMeans Clustering on Label Analysis (Python)

Python (pyscro)

18 Nov 2021 - This Xtra implements kMeans clustering on a label analysis spreadsheet. Separated objects can be clustered based on any measure group that is inbuilt or user customized.  Learn more

Differential Interference Contrast (DIC) Image Segmentation and Quantification using Deep Learning
Add-on How-to

Differential Interference Contrast (DIC) Image Segmentation and Quantification using Deep Learning

Recipe (hxrecipe), Deep learning model, Demo

18 Nov 2021 - This workflow uses deep learning to segment images obtained by Differential Interference Contrast (DIC) microscopy. Nuclei and mitochondria are segmented and counted cell per cell.  Learn more

Porosity Volume Fraction Analysis
Add-on How-to

Porosity Volume Fraction Analysis

Project (hx, pgo), Demo, Data

18 Nov 2021 - This tutorial demonstrates the steps to quantify porosity volume fraction and distribution.  Learn more

Bookmarks Manager
Add-on

Bookmarks Manager

Python (pyscro)

18 Nov 2021 - Add bookmarks to your project, including status and camera, so you can easily retrieve a given visualization. You can then navigate through the bookmarks.  Learn more

Landmark based Data Alignment
Add-on How-to

Landmark based Data Alignment

Tcl, Demo

18 Nov 2021 - This module can be used to facilitate the alignment of datasets using pairs of landmarks. The video tutorial demonstrates this technique.  Learn more

Inter Time Steps Recipe Player
Add-on How-to

Inter Time Steps Recipe Player

Recipe (hxrecipe), Python (pyscro), Project (hx, pgo), Demo, Data

18 Nov 2021 - The Inter Time Steps Recipe Player module executes a two-input recipe to a specific pair of two successive time steps of a time series dataset, or to all its pairs of two successive time steps.  Learn more

How to Script the Instantiation of a Python Script Object Xtra
Add-on How-to

How to Script the Instantiation of a Python Script Object Xtra

Python (pyscro)

9 Sep 2021 - This Xtra provides a script template that can be used to instantiate a Python script object Xtra from the Python console or from a Python script.  Learn more

Using Tcl Command Module for Multi-File OBJ Export
Add-on How-to

Using Tcl Command Module for Multi-File OBJ Export

Tcl, Project (hx, pgo)

7 Sep 2021 - The Tcl Command Module makes it easy to export the surfaces of single objects from a multi-object surface as OBJ (Wavefront) files.  Learn more