Trabecular Segmentation Workflow for Murine Tibial Bone
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
11 Dec 2023 - Here we provide a workflow to easily obtain the segmentation of trabecular bones. Learn more
Visualize Identified Molecules of a Cryo-Tomogram
Python (pyscro), Project (hx, pgo)
4 Dec 2023 - This Xtra provides the means to import results from template matching and visualize them with the Molecule Cloud View module. In addition, a module is provided to crop point clouds according to an ROI-box. Learn more
Python (pyscro)
11 Sep 2023 - A set of four templates to create rapid and efficient visualization of your data Learn more
Python (pyscro)
6 Mar 2023 - A module to enter and execute Python code from Amira-Avizo Software interface. Learn more
Python (pyscro)
17 Nov 2022 - This module allows you to run a given recipe while varying a chosen parameter value of any of the modules making up the recipe. Learn more
Tcl
18 Oct 2022 - This Xtra arranges all materials of a surface in a grid view. Learn more
XPand module
8 Sep 2022 - This Xtra provides a module that evaluates a scalar field at each point of a Spatial Graph and stores the result as the thickness attribute of the resulting Spatial Graph. Learn more
Volume Operations: Flip, Swap, Auto-Crop, and Enlarge
XPand module
8 Sep 2022 - This Xtra contains a set of modules that allow you to perform and automate volume operations on your data. Learn more
Reconstruct Spatial Graph from Markers
XPand module
1 Sep 2022 - This Xtra filters a Spatial Graph to keep only segments that have at least one point in each of the labels of an input Label Field. Learn more
Divide Full Data Volume into Defined Sub-Volume Blocks for Label Analysis
Recipe (hxrecipe), Project (hx, pgo), Demo
1 Sep 2022 - This Xtra demonstrates how to use the Arithmetic module to divide a whole volume data into defined sub-volume blocks and then perform label analysis on the blocks. Learn more
Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane
XPand module
26 Jul 2022 - This Xtra provides a set of three modules to compute distance and projection to a user-defined plane. Learn more
Xtras Installer for Amira-Avizo 2023.1 and Prior
Recipe (hxrecipe), Recipe ISP, IVP, A2D, Deep learning model, Python (pyscro), Tcl, XPand module, Project (hx, pgo), Template, Demo, Data, Misc
30 Jun 2022 - The Xtras Installer is a tool that provides an easy way to install resources from the Xtra Library on to your local machine. Learn more
Python (pyscro)
10 Jun 2022 - This module merges together a set of several 2D/3D images into one single volume. It is very helpful for building a 2D image stack from a set of 2D images for ground truth definition. Learn more
Object Separation using Random-Walk Distance Map
Recipe ISP, IVP, A2D, Demo, Data
3 Jun 2022 - Recipe utilizing an object separation workflow relying on the Random-Walk Distance Map. It is more robust than Separate Object for noisy segmentation or non-spherical shapes. Learn more
Tcl
1 Jun 2022 - Using this module, the "Materials" parameter-bundle of a label-field is created and filled with an ID and name for each label-value. Learn more
Python (pyscro)
13 May 2022 - This Xtra automatically sets the scalebar parameters to comply with the requirements for scientific papers. Learn more
Tcl
13 May 2022 - The coordinate-axes displayed using the "Axes" module cannot be scaled easily. Using this Xtra, you can easily change the lengths of the axes and the location of the displayed origin. Learn more
High Content Screening Plate Manager
Python (pyscro), Tcl
13 May 2022 - Load, visualize, and process multi-channel fields from Thermo Scientific CellInsight CX5, CX7 LED, and CX7 LZR HCA instruments and HCS Studio software. Learn more
Bone Segmentation Workflow for Murine Hindpaw
Recipe ISP, IVP, A2D, Demo, Data
28 Apr 2022 - Semi-automatic workflow and recipe for high-throughput bone segmentation of murine hindpaw micro-CT datasets. Learn more
Python (pyscro)
28 Apr 2022 - This module exports an image of color-washed data. Learn more
XPand module
6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice. Learn more