Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software
Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.
Apply a Recipe on a Batch of Files
Recipe (hxrecipe), Tcl
25 Aug 2020 - Apply a recipe to a batch of files and save results in output directory.
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
24 Aug 2020 - A 2D cell tracking example from a multichannel time series data set. Contains a segmentation recipe, modules needed to track the cells through time, and a video of the finished result.
Create a porosity analysis recipe
Recipe (hxrecipe), Demo
15 Jul 2020 - This tutorial explains how to create a simple porosity analysis and turn it into a push-button recipe.
Segment TEM data without artifact and background effect
Recipe (hxrecipe), Tcl, Project (hx, pgo)
10 Jul 2020 - Segment TEM data aided by the Structure enhancement filter.
2D SEM (White) Grain Segmentation
Recipe (hxrecipe), Data
21 Oct 2019 - This recipe segments and calculate the physical attributes of the white grains in the 2D SEM image
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
21 Oct 2019 - This tutorial demonstrated how to quantify thickness distribution along the length
Porosity Clustering Analysis and Distance to Surface
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
21 Oct 2019 - This tutorial demonstrates the steps to quantify porosity distribution and the distance to surface analysis.
Cracks and cavities segmentation in CT data
Recipe (hxrecipe), Data
21 Oct 2019 - This recipe is useful in segmenting data with cracks/pores and cavities.
Feature segmentation for non-uniform illumination and low-contrast images
Recipe (hxrecipe)
17 Oct 2019 - The recipe lets you segment small features on images with non-uniform illumination and low contrast.
Eagleford Shale FIB-SEM Segmentation
Recipe (hxrecipe)
17 Oct 2019 - This recipe guided workflow will result in a 5-phase segmentation applicable to the included dataset and most typical FIB-SEM data. Input Data, the Recipe, Output data are included here.
Recipe (hxrecipe), Demo, Data
16 Oct 2019 - The calculation of a relative pore fraction for each separated grains.
Export Spatial Graph to MS Excel XML document
Recipe (hxrecipe), Tcl, Demo
16 Oct 2019 - An Amira-Avizo recipe to export to a XML document which can be used in MS Excel for further analysis.
Recipe (hxrecipe), XPand module, Data
14 Oct 2019 - Module for sequencing a recipe on each individual isolated label from a label field.
Berea Pore Size Distribution Tutorial
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
11 Oct 2019 - Create a semi-automatic workflow for Pore Size Distribution on Berea sandstone