Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software

Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.

Feature segmentation for non-uniform illumination and low-contrast images

Feature segmentation for non-uniform illumination and low-contrast images

Recipe (hxrecipe)

The recipe lets you segment small features on images with non-uniform illumination and low contrast.

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Porosity Clustering Analysis and Distance to Surface

Porosity Clustering Analysis and Distance to Surface

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

This tutorial demonstrates the steps to quantify porosity distribution and the distance to surface analysis.

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Relative pore fraction

Relative pore fraction

Recipe (hxrecipe), Demo, Data

The calculation of a relative pore fraction for each separated grains.

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Recipe Sequencer

Recipe Sequencer

Recipe (hxrecipe), XPand module, Data

Module for sequencing a recipe on each individual isolated label from a label field.

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Length Distribution Analysis

Length Distribution Analysis

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

This tutorial demonstrated how to quantify thickness distribution along the length

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Export Spatial Graph to MS Excel XML document

Export Spatial Graph to MS Excel XML document

Recipe (hxrecipe), Tcl, Demo

An Amira-Avizo recipe to export to a XML document which can be used in MS Excel for further analysis.

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Eagleford Shale FIB-SEM Segmentation

Eagleford Shale FIB-SEM Segmentation

Recipe (hxrecipe)

This recipe guided workflow will result in a 5-phase segmentation applicable to the included dataset and most typical FIB-SEM data. Input Data, the Recipe, Output data are included here.

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Cracks and cavities segmentation in CT data

Cracks and cavities segmentation in CT data

Recipe (hxrecipe), Data

This recipe is useful in segmenting data with cracks/pores and cavities.

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Berea Pore Size Distribution Tutorial

Berea Pore Size Distribution Tutorial

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

Create a semi-automatic workflow for Pore Size Distribution on Berea sandstone

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2D SEM  (White) Grain Segmentation

2D SEM (White) Grain Segmentation

Recipe (hxrecipe), Data

This recipe segments and calculate the physical attributes of the white grains in the 2D SEM image

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