Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software
Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.
Demo, Misc
24 Feb 2021 - This video tutorial demonstrates how to deal with visualization of large datasets.
Non-Standard Python Package Installation Tutorial
Demo, Misc
13 Jan 2021 - Brief video explaining how to install a Python package in a newly created Python environment using pip or edm.
Multi-component analysis of X-ray Computed Tomography datasets
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
4 Jan 2021 - The following videos and training material detail the steps taken to automate the analysis of multiple parts in a single X-ray CT volume.
Analysis of X-ray CT calibration spheres using the Metrology workroom
Demo
4 Jan 2021 - This video presents how to use the Metrology workroom to analyze calibration spheres used in X-ray Computed Tomography.
Demo
5 Oct 2020 - Brief video explaining how to set up an AMIRA_LOCAL path on Windows 10.
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
24 Aug 2020 - A 2D cell tracking example from a multichannel time series data set. Contains a segmentation recipe, modules needed to track the cells through time, and a video of the finished result.
Cell Detection and Tracking 2020.2
Recipe ISP (hxisp,a2d), Python (pyscro), Project (hx, pgo), Demo
21 Aug 2020 - Simple workflow for tracking cell nuclei in a 3D Time Series.
Create a porosity analysis recipe
Recipe (hxrecipe), Demo
15 Jul 2020 - This tutorial explains how to create a simple porosity analysis and turn it into a push-button recipe.
Avizo User's Guide translated to Japanese
Demo, Misc
11 May 2020 - You will find here a selection of Avizo tutorials translated to Japanese.
Molar Segmentation Using Watershed and Top-Hat and Surface Generation
Project (hx, pgo), Demo, Data
11 May 2020 - Data, tutorial, and complete project for segmenting a CT-scanned human molar artifact. The tutorial and project cover advanced image segmentation and surface generation.
Amira User's Guide translated to Japanese
Demo, Misc
29 Jan 2020 - You will find here a large selection of Amira tutorials translated to Japanese.
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
21 Oct 2019 - This tutorial demonstrated how to quantify thickness distribution along the length
Porosity Clustering Analysis and Distance to Surface
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
21 Oct 2019 - This tutorial demonstrates the steps to quantify porosity distribution and the distance to surface analysis.
Different methods to measure the volume of fibers generated by XFiber extension
Project (hx, pgo), Demo
16 Oct 2019 - This guideline aims to identify different ways to analyze the volume fraction of fibers traced by the XFiber extension.
Recipe (hxrecipe), Demo, Data
16 Oct 2019 - The calculation of a relative pore fraction for each separated grains.
Export Spatial Graph to MS Excel XML document
Recipe (hxrecipe), Tcl, Demo
16 Oct 2019 - An Amira-Avizo recipe to export to a XML document which can be used in MS Excel for further analysis.
Tutorial: Generate a DVC mesh of complex shapes
Demo, Data
10 Oct 2019 - This tutorial describes how to build a DVC mesh for specimens with complex shapes.
Porosity in a battery separator
Recipe ISP (hxisp,a2d), Demo, Data
26 Jun 2019 - The recipe classifies the pores in a battery separator (SEM image).
Recipe ISP (hxisp,a2d), Demo, Data
26 Jun 2019 - The recipe detects pores in a polymer divider (SEM image).