Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D
Recipe ISP, IVP, A2D
3 Jul 2020 - This is a workflow to segment out osteocytes in mouse bone sample using Amira-Avizo2D. Learn more
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
24 Aug 2020 - A 2D cell tracking example from a multichannel time series data set. Contains a segmentation recipe, modules needed to track the cells through time, and a video of the finished result. Learn more
Efficient Graph-based 2D Image Segmentation
XPand module
12 Feb 2021 - This Xtra implements efficient graph-based image segmentation by Felzenszwalb and Huttenlocher. Learn more
Python (pyscro)
11 May 2020 - This module extracts a specified label region by its ID. Learn more
Image Segmentation Evaluation Using Standard Metrics (Python)
Python (pyscro), Project (hx, pgo)
8 Mar 2021 - Segmentation evaluation using standard precision, and recall metrics for comparing two segmentation labels. Learn more
Bone Segmentation Workflow for Murine Hindpaw
Recipe ISP, IVP, A2D, Demo, Data
28 Apr 2022 - Semi-automatic workflow and recipe for high-throughput bone segmentation of murine hindpaw micro-CT datasets. Learn more