Segmentation of Pathological Osteocytes Present in an Undecalcified Piece of Bone from Mice using Amira2D
Add-on

Segmentation of Pathological Osteocytes Present in an Undecalcified Piece of Bone from Mice using Amira2D

Recipe ISP, IVP, A2D

3 Jul 2020 - This is a workflow to segment out osteocytes present in mouse bone sample using Amira2D.  Learn more

2D Cell Tracking Example
Add-on

2D Cell Tracking Example

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

24 Aug 2020 - A 2D cell tracking example from a multichannel time series data set. Contains a segmentation recipe, modules needed to track the cells through time, and a video of the finished result.  Learn more

Efficient Graph-based 2D Image Segmentation
Add-on

Efficient Graph-based 2D Image Segmentation

XPand module

12 Feb 2021 - This Xtra implements efficient graph-based image segmentation by Felzenszwalb and Huttenlocher.  Learn more

Extract Label
Add-on

Extract Label

Python (pyscro)

11 May 2020 - This module extracts a specified label region by the ID.  Learn more

Image Segmentation Evaluation Using Standard Metrics (Python)
Add-on

Image Segmentation Evaluation Using Standard Metrics (Python)

Python (pyscro), Project (hx, pgo)

8 Mar 2021 - Segmentation evaluation using standard precision, and recall metrics for comparing two segmentation labels.  Learn more

Bone Segmentation Workflow for Murine Hindpaw
Add-on How-to

Bone Segmentation Workflow for Murine Hindpaw

Recipe ISP, IVP, A2D, Demo, Data

28 Apr 2022 - Semi-automatic workflow and recipe for high-throughput bone segmentation of murine hindpaw micro-CT datasets.  Learn more