Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software

Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.

Incremental Global DVC

Incremental Global DVC

Python (pyscro)

3 Oct 2019 - Perform incremental DVC analysis for a series of deformed image, using either small strain or large strain approaches (note: to run correctly the Green Lagrange strain script needs to be installed).

DVC Accuracy

DVC Accuracy

Python (pyscro)

3 Oct 2019 - This module allows the user to measure the displacement and strain errors from two repeat scans.

Cumulate Displacement Field

Cumulate Displacement Field

Python (pyscro)

4 Mar 2020 - This module allows the user to add multiple displacement fields.

2D Cell Tracking Example

2D Cell Tracking Example

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

24 Aug 2020 - A 2D cell tracking example from a multichannel time series data set. Contains a segmentation recipe, modules needed to track the cells through time, and a video of the finished result.

Apply a Recipe on a Batch of Files

Apply a Recipe on a Batch of Files

Recipe (hxrecipe), Tcl

25 Aug 2020 - Apply a recipe to a batch of files and save results in output directory.