Slice by Slice Thinning New
Add-on

Slice by Slice Thinning

XPand module

6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice.  Learn more

How to Set the Colormap for Ortho Slice and Volume Rendering
How-to

How to Set the Colormap for Ortho Slice and Volume Rendering

Demo

18 Nov 2021 - This tutorial is an introduction to the basic principle and use of colormaps.  Learn more

How to Create a Particles Segmentation Recipe in Avizo2D Software using its ISP Workroom
How-to

How to Create a Particles Segmentation Recipe in Avizo2D Software using its ISP Workroom

Demo

18 Nov 2021 - This tutorial demonstrates how to use the ISP workroom in Avizo2D software to create and run a recipe for particles segmentation.  Learn more

FIBSEM Mitochondria Segmentation
Add-on How-to

FIBSEM Mitochondria Segmentation

Deep learning model

12 Jan 2021 - Pre-trained model for the Deep Learning Prediction module detecting mitochondria in a Focused Ion Beam Scanning Electron Microscope (FIBSEM) data set.  Learn more

Relative Area Fraction for Amira-Avizo2D
Add-on How-to

Relative Area Fraction for Amira-Avizo2D

Recipe ISP (hxisp,a2d), Python (pyscro), Data, Misc

5 Oct 2020 - This Xtra provides a module to help compute the area fraction of a label over the area of another label in Amira-Avizo2D.  Learn more

AMIRA_LOCAL Setup Tutorial
How-to

AMIRA_LOCAL Setup Tutorial

Demo

5 Oct 2020 - This Xtra provides a brief video that explains how to set up an AMIRA_LOCAL path on Windows 10.  Learn more

Segmentation of Pathological Osteocytes Present in an Undecalcified Piece of Bone from Mice using Amira2D
Add-on

Segmentation of Pathological Osteocytes Present in an Undecalcified Piece of Bone from Mice using Amira2D

Recipe ISP (hxisp,a2d)

3 Jul 2020 - This is a workflow to segment out osteocytes present in mouse bone sample using Amira2D.  Learn more

How to use deep learning models in AmiraAvizo2D Analyzer
Add-on

How to use deep learning models in AmiraAvizo2D Analyzer

Recipe ISP (hxisp,a2d), Deep learning model, Data

3 Oct 2019 - Examples showing how to use AI (deep learning models) in an Analyzer recipe (hxisp)  Learn more

Porous Silicon Batch
Add-on

Porous Silicon Batch

Recipe ISP (hxisp,a2d), Data

18 Sep 2019 - Batch processing of a subset of porous silicon SEM images.  Learn more

Three Phase Ti Segmentation
Add-on

Three Phase Ti Segmentation

Recipe ISP (hxisp,a2d), Data

24 Jul 2019 - Alpha, Borides, Beta segmentation of FIB Serial Section Dataset of Ti Alloy with Borides  Learn more

Plates in Ti-62222
Add-on

Plates in Ti-62222

Recipe ISP (hxisp,a2d), Data

24 Jul 2019 - FIB Serial Section of Ti-62222  Learn more

Particles identification in Nickel-Base Superalloy
Add-on

Particles identification in Nickel-Base Superalloy

Recipe ISP (hxisp,a2d), Python (pyscro), Data

24 Jul 2019 - FIB Serial Section of Particles in Nickel-Base Superalloy  Learn more

Getting Started with Deep Learning Training for Image Segmentation
Add-on

Getting Started with Deep Learning Training for Image Segmentation

Deep learning model, Project (hx, pgo), Data

27 Jun 2019 - Model and companion project for the Deep Learning tutorial.  Learn more

Size distribution of Nb-Cu nanoparticles
Add-on

Size distribution of Nb-Cu nanoparticles

Recipe ISP (hxisp,a2d), Data

26 Jun 2019 - The recipe segments the Nb particles and the Cu particles.  Learn more

Detecting Pores in Porous Silicon
Add-on

Detecting Pores in Porous Silicon

Recipe ISP (hxisp,a2d), Data

26 Jun 2019 - The recipe detects pores in porous silicon.  Learn more

Porosity in a Battery Separator
Add-on

Porosity in a Battery Separator

Recipe ISP (hxisp,a2d), Data

26 Jun 2019 - The recipe classifies the pores in a battery separator (SEM image).  Learn more

Porosity in a Polymer Divider
Add-on

Porosity in a Polymer Divider

Recipe ISP (hxisp,a2d), Demo, Data

26 Jun 2019 - The recipe detects pores in a polymer divider (SEM image).  Learn more

Particle Agglomeration
Add-on

Particle Agglomeration

Recipe ISP (hxisp,a2d), Data

26 Jun 2019 - The recipe segments particles that are touching each other, and individual ones.  Learn more

Automated sizing of large area nanoparticles
Add-on

Automated sizing of large area nanoparticles

Recipe ISP (hxisp,a2d), Python (pyscro)

25 Jun 2019 - The recipe segments large area Pt-Rh nanoparticles at high resolution (TEM image).  Learn more

Au-Ni-Cl Nanoparticles
Add-on

Au-Ni-Cl Nanoparticles

Recipe ISP (hxisp,a2d)

25 Jun 2019 - This recipe segments nanoparticles of different element from an EDS map.  Learn more

BSE SEM denoiser
Add-on

BSE SEM denoiser

Deep learning model

21 Jun 2019 - U-Net model for denoising back-scattered SEM images.  Learn more