XPand module
6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice. Learn more
How to Set the Colormap for Ortho Slice and Volume Rendering
Demo
18 Nov 2021 - This tutorial is an introduction to the basic principle and use of colormaps. Learn more
How to Create a Particles Segmentation Recipe in Avizo2D Software
Demo
18 Nov 2021 - This tutorial demonstrates how to use the Image Recipe Designer (formerly 'ISP') workroom in Avizo2D software to create and run a recipe for particles segmentation. Learn more
FIBSEM Mitochondria Segmentation
Deep learning model
12 Jan 2021 - Pre-trained model for the Deep Learning Prediction module detecting mitochondria in a Focused Ion Beam Scanning Electron Microscope (FIBSEM) data set. Learn more
Relative Area Fraction for Amira-Avizo2D
Recipe ISP, IVP, A2D, Python (pyscro), Data, Misc
5 Oct 2020 - This Xtra provides a module to help compute the area fraction of a label over the area of another label in Amira-Avizo2D. Learn more
Demo
5 Oct 2020 - This Xtra provides a brief video that explains how to set up an AMIRA_LOCAL path on Windows 10. Learn more
Segmentation of Pathological Osteocytes in an Undecalcified Piece of Mouse Bone using Amira-Avizo2D
Recipe ISP, IVP, A2D
3 Jul 2020 - This is a workflow to segment out osteocytes in mouse bone sample using Amira-Avizo2D. Learn more
How to Use Deep Learning Models in Amira-Avizo2D Analyzer
Recipe ISP, IVP, A2D, Deep learning model, Data
3 Oct 2019 - Examples showing how to use AI (deep learning models) in an Analyzer recipe (hxisp). Learn more
Getting Started with Deep Learning Training for Image Segmentation
Deep learning model, Project (hx, pgo), Data
27 Jun 2019 - Model and companion project for the Deep Learning tutorial. Learn more
Deep learning model
21 Jun 2019 - U-Net model for denoising back-scattered SEM images. Learn more