Scientific Scalebar New
Add-on

Scientific Scalebar

Python (pyscro)

13 May 2022 - This Xtra automatically sets the scalebar parameters to comply with scientific papers requirements.  Learn more

Scale Axes New
Add-on

Scale Axes

Tcl

13 May 2022 - The coordinate-axes displayed using the "Axes" module cannot easily be scaled. Using this Xtra, you can easily change the lengths of the axes and the location of the displayed origin.  Learn more

High Content Screening Plate Manager New
Add-on

High Content Screening Plate Manager

Python (pyscro), Tcl

13 May 2022 - Load, visualize and process multi-channel fields from Thermo Scientific CellInsight CX5, CX7 LED and CX7 LZR HCA instruments and HCS Studio software.  Learn more

Bone Segmentation Workflow for Murine Hindpaw New
Add-on How-to

Bone Segmentation Workflow for Murine Hindpaw

Recipe ISP (hxisp,a2d), Demo, Data

28 Apr 2022 - Semi-automatic workflow and recipe for high-throughput bone segmentation of murine hindpaw micro-CT datasets  Learn more

Extract Color Wash Image New
Add-on

Extract Color Wash Image

Python (pyscro)

28 Apr 2022 - This module exports an image of color-washed data  Learn more

How to Segment Cavities Using the Compute Ambient Occlusion Module New
How-to

How to Segment Cavities Using the Compute Ambient Occlusion Module

Demo

12 Apr 2022 - This tutorial demonstrates how to segment pores or cavities using the Compute Ambient Occlusion module.  Learn more

How to Perform Trabecular and Cortical Bone Segmentation New
How-to

How to Perform Trabecular and Cortical Bone Segmentation

Demo

12 Apr 2022 - This tutorial demonstrates how to use the Compute Ambient Occlusion module to perform the segmentation of trabecular and cortical bone, as well as of the pore space, and then how to use the Arithmetic module to aggregate those results in one label field.  Learn more

Slice by Slice Thinning New
Add-on

Slice by Slice Thinning

XPand module

6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice.  Learn more

Slab View New
Add-on How-to

Slab View

Python (pyscro), Project (hx, pgo)

24 Feb 2022 - The Slab View display module allows you to display only a slab from any kind of 3D visualization.  Learn more

How to Use the Surface View Module and Create Elaborate Surface Renderings
How-to

How to Use the Surface View Module and Create Elaborate Surface Renderings

Demo

30 Dec 2021 - This short video demonstrates the basic use of the Surface View module, and how to combine several Surface View modules to create elaborate renderings.  Learn more

How to Customize Amira-Avizo with moduleExtender
Add-on How-to

How to Customize Amira-Avizo with moduleExtender

Tcl, Misc

25 Nov 2021 - Are there module settings you always need to change during your daily work? This Xtra describes how you can permanently change default settings of modules in Amira-Avizo.  Learn more

Masking Map by Molecule
Add-on

Masking Map by Molecule

Tcl

18 Nov 2021 - Module Mask Map By Molecule lets you mask an EM map of a macro molecule by an atomic model of the entire or partial molecule. This can be useful when validating EM maps from SPA with published models from the Protein Data Bank.  Learn more

kMeans Clustering on Label Analysis (Python)
Add-on

kMeans Clustering on Label Analysis (Python)

Python (pyscro)

18 Nov 2021 - This Xtra implements kMeans clustering on a label analysis spreadsheet. Separated objects can be clustered based on any measure group that is inbuilt or user customized.  Learn more

Differential Interference Contrast (DIC) Image Segmentation and Quantification using Deep Learning
Add-on How-to

Differential Interference Contrast (DIC) Image Segmentation and Quantification using Deep Learning

Recipe (hxrecipe), Deep learning model, Demo

18 Nov 2021 - This workflow uses deep learning to segment images obtained by Differential Interference Contrast (DIC) microscopy. Nuclei and mitochondria are segmented and counted cell per cell.  Learn more

Porosity Volume Fraction Analysis
Add-on How-to

Porosity Volume Fraction Analysis

Project (hx, pgo), Demo, Data

18 Nov 2021 - This tutorial demonstrates the steps to quantify porosity volume fraction and distribution.  Learn more

Bookmarks Manager
Add-on

Bookmarks Manager

Python (pyscro)

18 Nov 2021 - Add bookmarks to your project, including status and camera, so you can easily retrieve a given visualization. You can then navigate through the bookmarks.  Learn more

Landmark based Data Alignment
Add-on How-to

Landmark based Data Alignment

Tcl, Demo

18 Nov 2021 - This module can be used to facilitate the alignment of datasets using pairs of landmarks. The video tutorial demonstrates this technique.  Learn more

Inter Time Steps Recipe Player
Add-on How-to

Inter Time Steps Recipe Player

Recipe (hxrecipe), Python (pyscro), Project (hx, pgo), Demo, Data

18 Nov 2021 - The Inter Time Steps Recipe Player module executes a two-input recipe to a specific pair of two successive time steps of a time series dataset, or to all its pairs of two successive time steps.  Learn more

CMake Usage to Create XPand C++ API Modules
How-to

CMake Usage to Create XPand C++ API Modules

Demo

18 Nov 2021 - Starting with version 2021.2, the use of CMake is required to create solutions that implement the Amira Avizo 3D Pro extension modules with the XPand C ++ API. This video demonstrates what needs to be done to create a solution for MS Visual Studio.  Learn more

How to Set the Colormap for Ortho Slice and Volume Rendering
How-to

How to Set the Colormap for Ortho Slice and Volume Rendering

Demo

18 Nov 2021 - This tutorial is an introduction to the basic principle and use of colormaps.  Learn more

Incremental Digital Volume Correlation Tutorial
How-to

Incremental Digital Volume Correlation Tutorial

Demo

14 Sep 2021 - This tutorial explains how to use the new features of the Digital Volume Correlation extension to perform a series of incremental measurements.  Learn more