2D Cell Tracking Example
Add-on

2D Cell Tracking Example

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

24 Aug 2020 - A 2D cell tracking example from a multichannel time series data set. Contains a segmentation recipe, modules needed to track the cells through time, and a video of the finished result.  Learn more

Segmentation of agglomerated Ni nanoparticles
Add-on

Segmentation of agglomerated Ni nanoparticles

Recipe ISP, IVP, A2D

24 Aug 2020 - This recipe segments overlapping Ni nanoparticles on a high resolution STEM image after which a size distribution of the nanoparticles can also be computed  Learn more

Cell Detection and Tracking 2020.2
Add-on How-to

Cell Detection and Tracking 2020.2

Recipe ISP, IVP, A2D, Python (pyscro), Project (hx, pgo), Demo

21 Aug 2020 - Simple workflow for tracking cell nuclei in a 3D Time Series.  Learn more

Hough Circle Fitting
Add-on

Hough Circle Fitting

Python (pyscro)

30 Jul 2020 - Generalized Hough transform to fit circles to the image.  Learn more

Multi-Scale Cylinder Correlation
Add-on How-to

Multi-Scale Cylinder Correlation

Python (pyscro), Project (hx, pgo)

30 Jul 2020 - This module gives better results for fiber-tracing in the case of multiple fibers with differing or varying diameters in the same dataset.  Learn more

Create a porosity analysis recipe
How-to

Create a porosity analysis recipe

Recipe (hxrecipe), Demo

15 Jul 2020 - This tutorial explains how to create a simple porosity analysis and turn it into a push-button recipe.  Learn more

Cylinder Slice with Native Resolution in Z
Add-on

Cylinder Slice with Native Resolution in Z

XPand module

10 Jul 2020 - This Xtra module is a version of the Cylinder Slice module that sets the resolution, in the Z direction, of the extracted image to the native resolution of the input data.  Learn more

Optical Thin Section Pore Space Characterization in HSV colorspace
Add-on How-to

Optical Thin Section Pore Space Characterization in HSV colorspace

Python (pyscro), Project (hx, pgo), Data

10 Jul 2020 - Optical Thin Section Pore Space is segmented converting RGBA images in HSV colorspace by means of Python scripts.  Learn more

Segment TEM data without artifact  and background effect
Add-on

Segment TEM data without artifact and background effect

Recipe (hxrecipe), Tcl, Project (hx, pgo)

10 Jul 2020 - Segment TEM data aided by the Structure enhancement filter.  Learn more

Segmentation of Pathological Osteocytes Present in an Undecalcified Piece of Bone from Mice using Amira2D
Add-on

Segmentation of Pathological Osteocytes Present in an Undecalcified Piece of Bone from Mice using Amira2D

Recipe ISP, IVP, A2D

3 Jul 2020 - This is a workflow to segment out osteocytes present in mouse bone sample using Amira2D.  Learn more

Extracting and Visualizing Local Statistics from Fibrous Materials
Add-on How-to

Extracting and Visualizing Local Statistics from Fibrous Materials

Project (hx, pgo)

3 Jul 2020 - This XTRA entry discusses the application of the “Spatial Graph Local Statistics” to extract statistical information from traced fibers in a fibrous material. The sample is 50% glass fiber-reinforced polymer (GFRP), courtesy of EMS Grivory.  Learn more

Interactive Top-Hat by Reconstruction
Add-on How-to

Interactive Top-Hat by Reconstruction

XPand module

3 Jul 2020 - This module provides an interactive Top-Hat segmentation that prevents the segmentation of "false positive" porosity on the edges.  Learn more

 Imaging Codec for thumbnails in Windows Explorer
Add-on

Imaging Codec for thumbnails in Windows Explorer

Misc

24 Jun 2020 - Codec enabling thumbnails for .am images in Windows Explorer  Learn more

XFiber Automation
Add-on

XFiber Automation

Tcl, Project (hx, pgo), Data

17 Jun 2020 - To make use of XFiber, the user usually needs to input many parameters. This package provides 2 tools to ease Xfiber process by presetting Cylinder Correlation and Auto Trace Correlation modules values.  Learn more

Avizo User's Guide translated to Japanese
Add-on How-to

Avizo User's Guide translated to Japanese

Demo, Misc

11 May 2020 - You will find here a selection of Avizo tutorials translated to Japanese.  Learn more

Molar Segmentation Using Watershed and Top-Hat and Surface Generation
Add-on How-to

Molar Segmentation Using Watershed and Top-Hat and Surface Generation

Project (hx, pgo), Demo, Data

11 May 2020 - Data, tutorial, and complete project for segmenting a CT-scanned human molar artifact. The tutorial and project cover advanced image segmentation and surface generation.  Learn more

Extract Label
Add-on

Extract Label

Python (pyscro)

11 May 2020 - This module extracts a specified label region by the ID.  Learn more

Copy Measure Annotation Settings
Add-on

Copy Measure Annotation Settings

Tcl

15 Apr 2020 - This Tcl script-object can be used to copy visualisation settings from one measure to all others in a Measurement module. It is also possible to save/load settings to/from a text file.  Learn more

Caption From Port
Add-on

Caption From Port

Tcl

15 Apr 2020 - Use this module to fill the text field of a Caption module with the value of a port of another module.  Learn more

Scale-Space Laplacian of Gaussian Filter
Add-on

Scale-Space Laplacian of Gaussian Filter

Python (pyscro)

15 Apr 2020 - Image processing filter enhancing spherical or blob like objects of various sizes.  Learn more

Amira User's Guide translated to Japanese
Add-on How-to

Amira User's Guide translated to Japanese

Demo, Misc

29 Jan 2020 - You will find here a large selection of Amira tutorials translated to Japanese.  Learn more