Automatic Extraction of Surface Cross Section
Python (pyscro), Project (hx, pgo)
20 Oct 2020 - A module for creating partially transparent capping surfaces. Learn more
Auto Threshold for Multi-Thresholding
Tcl
19 Oct 2020 - The combination of Auto Thresholding and Multi-Thresholding makes it easy to create precise surfaces without additional smoothing, using the Generate Surface's smoothing option "Existing Weights". Learn more
Python (pyscro)
19 Oct 2020 - This Xtra creates a volume projection along any orthogonal axis using arithmetic operations. Learn more
Relative Area Fraction for Amira-Avizo2D
Recipe ISP (hxisp,a2d), Python (pyscro), Data, Misc
5 Oct 2020 - This Xtra provides a module to help compute the area fraction of a label over the area of another label in Amira-Avizo2D. Learn more
Demo
5 Oct 2020 - This Xtra provides a brief video that explains how to set up an AMIRA_LOCAL path on Windows 10. Learn more
Explode Surface Animation Script
Tcl
5 Oct 2020 - A script that will animate the expansion of pieces of a surface. Contains the script, documentation, an example surface, and a video of the finished result. Learn more
PerGeos Process Based Modelling
XPand module
4 Sep 2020 - Process Based Modelling modules for PerGeos Learn more
Apply a Recipe on a Batch of Files
Recipe (hxrecipe), Tcl
25 Aug 2020 - Apply a recipe to a batch of files and save the results in an output directory. Learn more
Tcl
24 Aug 2020 - A module that allows you to filter particles selectively, based on their contact with each border of the image. Learn more
Recipe (hxrecipe), Project (hx, pgo), Demo, Data
24 Aug 2020 - A 2D cell tracking example from a multichannel time series data set. Contains a segmentation recipe, modules needed to track the cells through time, and a video of the finished result. Learn more
Segmentation of agglomerated Ni nanoparticles
Recipe ISP (hxisp,a2d)
24 Aug 2020 - This recipe segments overlapping Ni nanoparticles on a high resolution STEM image after which a size distribution of the nanoparticles can also be computed Learn more
Cell Detection and Tracking 2020.2
Recipe ISP (hxisp,a2d), Python (pyscro), Project (hx, pgo), Demo
21 Aug 2020 - Simple workflow for tracking cell nuclei in a 3D Time Series. Learn more
Python (pyscro)
30 Jul 2020 - Generalized Hough transform to fit circles to the image. Learn more
Multi-Scale Cylinder Correlation
Python (pyscro), Project (hx, pgo)
30 Jul 2020 - This module gives better results for fiber-tracing in the case of multiple fibers with differing or varying diameters in the same dataset. Learn more
Create a porosity analysis recipe
Recipe (hxrecipe), Demo
15 Jul 2020 - This tutorial explains how to create a simple porosity analysis and turn it into a push-button recipe. Learn more
Cylinder Slice with Native Resolution in Z
XPand module
10 Jul 2020 - This Xtra module is a version of the Cylinder Slice module that sets the resolution, in the Z direction, of the extracted image to the native resolution of the input data. Learn more
Optical Thin Section Pore Space Characterization in HSV colorspace
Python (pyscro), Project (hx, pgo), Data
10 Jul 2020 - Optical Thin Section Pore Space is segmented converting RGBA images in HSV colorspace by means of Python scripts. Learn more
Segment TEM data without artifact and background effect
Recipe (hxrecipe), Tcl, Project (hx, pgo)
10 Jul 2020 - Segment TEM data aided by the Structure enhancement filter. Learn more
Recipe ISP (hxisp,a2d)
3 Jul 2020 - This is a workflow to segment out osteocytes present in mouse bone sample using Amira2D. Learn more
Extracting and Visualizing Local Statistics from Fibrous Materials
Project (hx, pgo)
3 Jul 2020 - This XTRA entry discusses the application of the “Spatial Graph Local Statistics” to extract statistical information from traced fibers in a fibrous material. The sample is 50% glass fiber-reinforced polymer (GFRP), courtesy of EMS Grivory. Learn more
Interactive Top-Hat by Reconstruction
XPand module
3 Jul 2020 - This module provides an interactive Top-Hat segmentation that prevents the segmentation of "false positive" porosity on the edges. Learn more