How to Set Up Two-Sided Clipping
How-to

How to Set Up Two-Sided Clipping

Demo

15 Feb 2021 - This tutorial explains how to set up two-sided clipping in order to transition between two visualizations of data.  Learn more

How to Use Camera Orbit and Animate a Rotation
How-to

How to Use Camera Orbit and Animate a Rotation

Demo

15 Feb 2021 - This tutorial explains how to use the Camera Orbit module, and then animate the rotation around an object in the Animation Director.  Learn more

Efficient Graph-based 2D Image Segmentation
Add-on

Efficient Graph-based 2D Image Segmentation

XPand module

12 Feb 2021 - This Xtra implements efficient graph-based image segmentation by Felzenszwalb and Huttenlocher.  Learn more

How to Create a Movie File
How-to

How to Create a Movie File

Demo

10 Feb 2021 - This tutorial explains how to create and export a movie file from the Animation Director.  Learn more

How to Compare Slices Side by Side
How-to

How to Compare Slices Side by Side

Demo

10 Feb 2021 - This tutorial explains how to perform a side-by-side comparison of two slices that display different information; for example, of raw data and its corresponding labeled image.  Learn more

Point Cloud to Spreadsheet
Add-on

Point Cloud to Spreadsheet

Python (pyscro)

22 Jan 2021 - This Python script-object allows you to convert a point-cloud object to a spreadsheet object.  Learn more

Non-Standard Python Package Installation Tutorial
How-to

Non-Standard Python Package Installation Tutorial

Demo, Misc

13 Jan 2021 - This Xtra provides a brief video that explains how to install a Python package in a newly created Python environment using pip or edm.  Learn more

FIBSEM Mitochondria Segmentation
Add-on How-to

FIBSEM Mitochondria Segmentation

Deep learning model

12 Jan 2021 - Pre-trained model for the Deep Learning Prediction module detecting mitochondria in a Focused Ion Beam Scanning Electron Microscope (FIBSEM) data set.  Learn more

Thresholding From Mean
Add-on How-to

Thresholding From Mean

Python (pyscro), Data

4 Jan 2021 - This module performs an adaptive global thresholding of the input image by computing a deviation from the mean of its grayscale values.  Learn more

How to Create and Animate a Camera Path
How-to

How to Create and Animate a Camera Path

Demo

3 Jan 2021 - This tutorial explains how to create a camera path, and then animate the camera along this path with the Animation Director.  Learn more

How to Animate the Appearance of Objects with the Animation Director
How-to

How to Animate the Appearance of Objects with the Animation Director

Demo

3 Jan 2021 - This tutorial explains how to animate the appearance and disappearance of objects with the Animation Director.  Learn more

How to Get Started with the Animation Director
How-to

How to Get Started with the Animation Director

Demo

3 Jan 2021 - This tutorial demonstrates the basic techniques of animation creation with the Animation Director.  Learn more

Export Measures
Add-on

Export Measures

Tcl

17 Nov 2020 - This module creates a spreadsheet that contains the measurement and annotation data (generated with the Measurement tool) that can be used for further analysis.  Learn more

Marker Based Watershed Recipe
Add-on

Marker Based Watershed Recipe

Recipe ISP, IVP, A2D

17 Nov 2020 - A recipe for applying a Marker Based Watershed (as in the Segmentation Editor) from the Project View.  Learn more

Automatic Extraction of Transparent Surface Cross Section
Add-on How-to

Automatic Extraction of Transparent Surface Cross Section

Python (pyscro), Project (hx, pgo)

20 Oct 2020 - A module for creating partially transparent capping surfaces.  Learn more

Auto Threshold for Multi-Thresholding
Add-on

Auto Threshold for Multi-Thresholding

Tcl

19 Oct 2020 - The combination of Auto Thresholding and Multi-Thresholding makes it easy to create precise surfaces without additional smoothing, using the Generate Surface's smoothing option "Existing Weights".  Learn more

Relative Area Fraction for Amira-Avizo2D
Add-on How-to

Relative Area Fraction for Amira-Avizo2D

Recipe ISP, IVP, A2D, Python (pyscro), Data, Misc

5 Oct 2020 - This Xtra provides a module to help compute the area fraction of a label over the area of another label in Amira-Avizo2D.  Learn more

AMIRA_LOCAL Setup Tutorial
How-to

AMIRA_LOCAL Setup Tutorial

Demo

5 Oct 2020 - This Xtra provides a brief video that explains how to set up an AMIRA_LOCAL path on Windows 10.  Learn more

Apply a Recipe on a Batch of Files
Add-on

Apply a Recipe on a Batch of Files

Recipe (hxrecipe), Tcl

25 Aug 2020 - Apply a recipe to a batch of files and save the results in an output directory.  Learn more

Selective Border Kill
Add-on

Selective Border Kill

Tcl

24 Aug 2020 - A module that allows you to filter particles selectively, based on their contact with each border of the image.  Learn more

Hough Circle Fitting
Add-on

Hough Circle Fitting

Python (pyscro)

30 Jul 2020 - This module uses a Generalized Hough-transform to detect circles in an image.  Learn more