Point Cloud to Spreadsheet
Add-on

Point Cloud to Spreadsheet

Python (pyscro)

22 Jan 2021 - This Python script-object allows you to convert a point-cloud object to a spreadsheet object.  Learn more

Thresholding From Mean
Add-on How-to

Thresholding From Mean

Python (pyscro), Data

4 Jan 2021 - This module performs an adaptive global thresholding of the input image by computing a deviation from the mean of its grayscale values.  Learn more

Automatic Extraction of Transparent Surface Cross Section
Add-on How-to

Automatic Extraction of Transparent Surface Cross Section

Python (pyscro), Project (hx, pgo)

20 Oct 2020 - A module for creating partially transparent capping surfaces.  Learn more

Volume Projection
Add-on

Volume Projection

Python (pyscro)

19 Oct 2020 - This Xtra creates a volume projection along any orthogonal axis using arithmetic operations.  Learn more

Relative Area Fraction for Amira-Avizo2D
Add-on How-to

Relative Area Fraction for Amira-Avizo2D

Recipe ISP, IVP, A2D, Python (pyscro), Data, Misc

5 Oct 2020 - This Xtra provides a module to help compute the area fraction of a label over the area of another label in Amira-Avizo2D.  Learn more

Hough Circle Fitting
Add-on

Hough Circle Fitting

Python (pyscro)

30 Jul 2020 - This module uses a Generalized Hough-transform to detect circles in an image.  Learn more

Multi-Scale Cylinder Correlation
Add-on How-to

Multi-Scale Cylinder Correlation

Python (pyscro), Project (hx, pgo)

30 Jul 2020 - This module gives better results for fiber-tracing in the case of multiple fibers with differing or varying diameters in the same dataset.  Learn more

Optical Thin Section Pore Space Characterization in HSV colorspace
Add-on How-to

Optical Thin Section Pore Space Characterization in HSV colorspace

Python (pyscro), Project (hx, pgo), Data

10 Jul 2020 - Optical Thin Section Pore Space is segmented converting RGBA images in HSV colorspace by means of Python scripts.  Learn more

Extract Label
Add-on

Extract Label

Python (pyscro)

11 May 2020 - This module extracts a specified label region by its ID.  Learn more

Scale-Space Laplacian of Gaussian Filter
Add-on

Scale-Space Laplacian of Gaussian Filter

Python (pyscro)

15 Apr 2020 - Image processing filter enhancing spherical or blob like objects of various sizes.  Learn more

Average Interleaved Data
Add-on

Average Interleaved Data

Python (pyscro), Project (hx, pgo)

21 Oct 2019 - The purpose of this python script object is to average interleaved data.  Learn more

Load a Numpy array into PerGeos-Amira-Avizo using the Python API
Add-on

Load a Numpy array into PerGeos-Amira-Avizo using the Python API

Python (pyscro)

21 Oct 2019 - This script simply reads and loads numpy arrays in a user specified directory into PerGeos/Amira-Avizo as an image.  Learn more

Random Forests for Multiclass Segmentation using Python API in PerGeos
Add-on

Random Forests for Multiclass Segmentation using Python API in PerGeos

Python (pyscro), Project (hx, pgo), Data

21 Oct 2019 - Simple demonstration of feature computation where the feature vector contains intensity and 2D eigenvalues (X & Y). This example uses random forests implementation from the sklearn package.  Learn more

Depthwise Volume Fraction
Add-on

Depthwise Volume Fraction

Python (pyscro)

17 Oct 2019 - This module allows the user to compute the volume fraction per separated region depending on depth from the surface of a segmented object.  Learn more

Parameter optimization for auto-thresholding a data
Add-on

Parameter optimization for auto-thresholding a data

Python (pyscro), Project (hx, pgo), Data

7 Oct 2019 - In this pyscro example we use opencv and matplotlib to automatically calculate an optimized parameter for thresholding the data based on various metrics.  Learn more

How to use PyQt5 in a pyscro module
Add-on

How to use PyQt5 in a pyscro module

Python (pyscro)

7 Oct 2019 - This example shows how to use PyQt5 in a pyscro module.  Learn more

Convert To Spreadsheet
Add-on

Convert To Spreadsheet

Python (pyscro)

3 Oct 2019 - This module converts a field mapped onto an Unstructured Model grid, resulting from a Digital Volume Correlation workflow, into a spreadsheet containing the X,Y,Z positions and the values of the field.  Learn more

Particles identification in Nickel-Base Superalloy
Add-on

Particles identification in Nickel-Base Superalloy

Recipe ISP, IVP, A2D, Python (pyscro), Data

24 Jul 2019 - FIB Serial Section of Particles in Nickel-Base Superalloy  Learn more

Automated Sizing of Large Area Nanoparticles
Add-on

Automated Sizing of Large Area Nanoparticles

Recipe ISP, IVP, A2D, Python (pyscro)

25 Jun 2019 - The recipe segments large area Pt-Rh nanoparticles at high resolution (TEM image).  Learn more