Eval on Spatial Graph New
Add-on

Eval on Spatial Graph

XPand module

8 Sep 2022 - This Xtra evaluates a scalar field at each point of a Spatial Graph and stores the result as thickness attribute of the resulting Spatial Graph.  Learn more

Volume Operations: Flip, Swap, Auto-Crop and Enlarge New
Add-on

Volume Operations: Flip, Swap, Auto-Crop and Enlarge

XPand module

8 Sep 2022 - This Xtra is a set of modules allowing to perform and automate volume operations on your data.  Learn more

Extract Objects New
Add-on

Extract Objects

XPand module

1 Sep 2022 - The Xtra module extracts single objects based on labels' information listed in a Label Analysis.  Learn more

Reconstruct Spatial Graph from Markers New
Add-on

Reconstruct Spatial Graph from Markers

XPand module

1 Sep 2022 - This Xtra filters a Spatial Graph to keep only segments that have at least one point in each of the labels of an input Label Field.  Learn more

Divide Full Data Volume into Defined Sub-Volume Blocks for Label Analysis New
Add-on How-to

Divide Full Data Volume into Defined Sub-Volume Blocks for Label Analysis

Recipe (hxrecipe), Project (hx, pgo), Demo

1 Sep 2022 - This Xtra demonstrates how to use the Arithmetic module to divide a whole volume data into defined sub-volume blocks and then perform label analysis on the blocks.  Learn more

How to Install the Deep Learning Python Environment New
How-to

How to Install the Deep Learning Python Environment

Python (pyscro), Demo, Misc

29 Jul 2022 - Two videos explain how to install the dependencies needed to use Deep Learning within Amira 3D, Avizo 3D, or Pergeos. One covers the standard install and the other is for users without an internet connection.  Learn more

How to Calculate Surface Area of a Custom ROI New
How-to

How to Calculate Surface Area of a Custom ROI

Demo, Data

29 Jul 2022 - This tutorial elaborates how to draw a region of interest on a surface. With this ROI, you can calculate its surface area.  Learn more

How to Calculate Surface Area New
How-to

How to Calculate Surface Area

Demo

29 Jul 2022 - Three approaches are shown for extracting a surface and measuring the surface area of its geometry.  Learn more

Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane New
Add-on

Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane

XPand module

26 Jul 2022 - This Xtra provides a set of three modules to compute distance and projection to a user-defined plane.  Learn more

Image Stack Builder
Add-on

Image Stack Builder

Python (pyscro)

10 Jun 2022 - This module merges together a set of several 2D/3D images into one single volume. It is very helpful for building a 2D image stack from a set of 2D images for ground truth definition.  Learn more

Create Material IDs
Add-on

Create Material IDs

Tcl

1 Jun 2022 - Using this module, the "Materials" parameter-bundle of a label-field is created and filled with an ID and name for each label-value.  Learn more

Scientific Scalebar
Add-on

Scientific Scalebar

Python (pyscro)

13 May 2022 - This Xtra automatically sets the scalebar parameters to comply with the requirements for scientific papers.  Learn more

Scale Axes
Add-on

Scale Axes

Tcl

13 May 2022 - The coordinate-axes displayed using the "Axes" module cannot be scaled easily. Using this Xtra, you can easily change the lengths of the axes and the location of the displayed origin.  Learn more

Extract Color Wash Image
Add-on

Extract Color Wash Image

Python (pyscro)

28 Apr 2022 - This module exports an image of color-washed data.  Learn more

How to Segment Cavities Using the Compute Ambient Occlusion Module
How-to

How to Segment Cavities Using the Compute Ambient Occlusion Module

Demo

12 Apr 2022 - This tutorial demonstrates how to segment pores or cavities using the Compute Ambient Occlusion module.  Learn more

Slice by Slice Thinning
Add-on

Slice by Slice Thinning

XPand module

6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice.  Learn more

Slab View
Add-on How-to

Slab View

Python (pyscro), Project (hx, pgo)

24 Feb 2022 - The Slab View display module allows you to display only a slab from any kind of 3D visualization.  Learn more

How to Use the Surface View Module and Create Elaborate Surface Renderings
How-to

How to Use the Surface View Module and Create Elaborate Surface Renderings

Demo

30 Dec 2021 - This short video demonstrates the basic use of the Surface View module, and how to combine several Surface View modules to create elaborate renderings.  Learn more

How to Customize Amira-Avizo with moduleExtender
Add-on How-to

How to Customize Amira-Avizo with moduleExtender

Tcl, Misc

25 Nov 2021 - Are there module settings you always need to change during your daily work? This Xtra describes how you can permanently change default settings of modules in Amira-Avizo.  Learn more

kMeans Clustering on Label Analysis (Python)
Add-on

kMeans Clustering on Label Analysis (Python)

Python (pyscro)

18 Nov 2021 - This Xtra implements kMeans clustering on a label analysis spreadsheet. Separated objects can be clustered based on any measure group that is inbuilt or user customized.  Learn more

Porosity Volume Fraction Analysis
Add-on How-to

Porosity Volume Fraction Analysis

Project (hx, pgo), Demo, Data

18 Nov 2021 - This tutorial demonstrates the steps to quantify porosity volume fraction and distribution.  Learn more