New
XPand module
8 Sep 2022 - This Xtra evaluates a scalar field at each point of a Spatial Graph and stores the result as thickness attribute of the resulting Spatial Graph. Learn more
New
Volume Operations: Flip, Swap, Auto-Crop and Enlarge
XPand module
8 Sep 2022 - This Xtra is a set of modules allowing to perform and automate volume operations on your data. Learn more
New
Reconstruct Spatial Graph from Markers
XPand module
1 Sep 2022 - This Xtra filters a Spatial Graph to keep only segments that have at least one point in each of the labels of an input Label Field. Learn more
New
Divide Full Data Volume into Defined Sub-Volume Blocks for Label Analysis
Recipe (hxrecipe), Project (hx, pgo), Demo
1 Sep 2022 - This Xtra demonstrates how to use the Arithmetic module to divide a whole volume data into defined sub-volume blocks and then perform label analysis on the blocks. Learn more
New
How to Install the Deep Learning Python Environment
Python (pyscro), Demo, Misc
29 Jul 2022 - Two videos explain how to install the dependencies needed to use Deep Learning within Amira 3D, Avizo 3D, or Pergeos. One covers the standard install and the other is for users without an internet connection. Learn more
New
How to Calculate Surface Area of a Custom ROI
Demo, Data
29 Jul 2022 - This tutorial elaborates how to draw a region of interest on a surface. With this ROI, you can calculate its surface area. Learn more
New
Demo
29 Jul 2022 - Three approaches are shown for extracting a surface and measuring the surface area of its geometry. Learn more
New
Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane
XPand module
26 Jul 2022 - This Xtra provides a set of three modules to compute distance and projection to a user-defined plane. Learn more
Python (pyscro)
10 Jun 2022 - This module merges together a set of several 2D/3D images into one single volume. It is very helpful for building a 2D image stack from a set of 2D images for ground truth definition. Learn more
Object Separation using Random-Walk Distance Map
Recipe ISP, IVP, A2D, Demo, Data
3 Jun 2022 - Recipe realizing an object separation workflow relying on Random-Walk Distance Map. It is more robust for noisy segmentation or non-spherical shapes, compared to Separate Object. Learn more
Tcl
1 Jun 2022 - Using this module, the "Materials" parameter-bundle of a label-field is created and filled with an ID and name for each label-value. Learn more
Python (pyscro)
13 May 2022 - This Xtra automatically sets the scalebar parameters to comply with the requirements for scientific papers. Learn more
Tcl
13 May 2022 - The coordinate-axes displayed using the "Axes" module cannot be scaled easily. Using this Xtra, you can easily change the lengths of the axes and the location of the displayed origin. Learn more
High Content Screening Plate Manager
Python (pyscro), Tcl
13 May 2022 - Load, visualize, and process multi-channel fields from Thermo Scientific CellInsight CX5, CX7 LED, and CX7 LZR HCA instruments and HCS Studio software. Learn more
Bone Segmentation Workflow for Murine Hindpaw
Recipe ISP, IVP, A2D, Demo, Data
28 Apr 2022 - Semi-automatic workflow and recipe for high-throughput bone segmentation of murine hindpaw micro-CT datasets. Learn more
Python (pyscro)
28 Apr 2022 - This module exports an image of color-washed data. Learn more
How to Segment Cavities Using the Compute Ambient Occlusion Module
Demo
12 Apr 2022 - This tutorial demonstrates how to segment pores or cavities using the Compute Ambient Occlusion module. Learn more
How to Perform Trabecular and Cortical Bone Segmentation
Demo
12 Apr 2022 - This tutorial demonstrates how to use the Compute Ambient Occlusion module to perform the segmentation of trabecular and cortical bone, as well as of the pore space, and then how to use the Arithmetic module to aggregate those results in one label field. Learn more
XPand module
6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice. Learn more
Python (pyscro), Project (hx, pgo)
24 Feb 2022 - The Slab View display module allows you to display only a slab from any kind of 3D visualization. Learn more
How to Use the Surface View Module and Create Elaborate Surface Renderings
Demo
30 Dec 2021 - This short video demonstrates the basic use of the Surface View module, and how to combine several Surface View modules to create elaborate renderings. Learn more