Iterate Recipe New
Add-on

Iterate Recipe

Python (pyscro)

17 Nov 2022 - This module allows you to run a given recipe while varying a chosen parameter value of any of the modules making up the recipe.  Learn more

Eval on Spatial Graph
Add-on

Eval on Spatial Graph

XPand module

8 Sep 2022 - This Xtra provides a module that evaluates a scalar field at each point of a Spatial Graph and stores the result as the thickness attribute of the resulting Spatial Graph.  Learn more

Volume Operations: Flip, Swap, Auto-Crop and Enlarge
Add-on

Volume Operations: Flip, Swap, Auto-Crop and Enlarge

XPand module

8 Sep 2022 - This Xtra contains a set of modules that allow you to perform and automate volume operations on your data.  Learn more

Extract Objects
Add-on

Extract Objects

XPand module

1 Sep 2022 - The Xtra module extracts single objects based on label information listed in a Label Analysis.  Learn more

Reconstruct Spatial Graph from Markers
Add-on

Reconstruct Spatial Graph from Markers

XPand module

1 Sep 2022 - This Xtra filters a Spatial Graph to keep only segments that have at least one point in each of the labels of an input Label Field.  Learn more

How to Install the Deep Learning Python Environment
How-to

How to Install the Deep Learning Python Environment

Python (pyscro), Demo, Misc

29 Jul 2022 - Two videos explain how to install the dependencies needed to use Deep Learning within Amira 3D, Avizo 3D, or Pergeos. One covers the standard install and the other is for users without an internet connection.  Learn more

How to Calculate Surface Area of a Custom ROI
How-to

How to Calculate Surface Area of a Custom ROI

Demo, Data

29 Jul 2022 - This tutorial elaborates how to draw a region of interest on a surface. With this ROI, you can calculate its surface area.  Learn more

How to Calculate Surface Area
How-to

How to Calculate Surface Area

Demo

29 Jul 2022 - Three approaches are shown for extracting a surface and measuring the surface area of its geometry.  Learn more

Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane
Add-on

Plane Tools - Surface and Volume Distance to Plane and Spatial Graph Projection onto Plane

XPand module

26 Jul 2022 - This Xtra provides a set of three modules to compute distance and projection to a user-defined plane.  Learn more

Image Stack Builder
Add-on

Image Stack Builder

Python (pyscro)

10 Jun 2022 - This module merges together a set of several 2D/3D images into one single volume. It is very helpful for building a 2D image stack from a set of 2D images for ground truth definition.  Learn more

Object Separation using Random-Walk Distance Map
Add-on

Object Separation using Random-Walk Distance Map

Recipe ISP, IVP, A2D, Demo, Data

3 Jun 2022 - Recipe utilizing an object separation workflow relying on the Random-Walk Distance Map. It is more robust than Separate Object for noisy segmentation or non-spherical shapes.  Learn more

Scientific Scalebar
Add-on

Scientific Scalebar

Python (pyscro)

13 May 2022 - This Xtra automatically sets the scalebar parameters to comply with the requirements for scientific papers.  Learn more

Slice by Slice Thinning
Add-on

Slice by Slice Thinning

XPand module

6 Apr 2022 - This module performs the thinning of a binary image slice-by-slice.  Learn more

Split and Merge Segments
Add-on How-to

Split and Merge Segments

XPand module

29 Jun 2021 - The Split and Merge Segments module merges the two most representative segments at the intersection points of a graph structure and detaches the others.  Learn more

Efficient Graph-based 2D Image Segmentation
Add-on

Efficient Graph-based 2D Image Segmentation

XPand module

12 Feb 2021 - This Xtra implements efficient graph-based image segmentation by Felzenszwalb and Huttenlocher.  Learn more

Cylinder Slice with Native Resolution in Z
Add-on

Cylinder Slice with Native Resolution in Z

XPand module

10 Jul 2020 - This Xtra module is a version of the Cylinder Slice module that sets the resolution, in the Z direction, of the extracted image to the native resolution of the input data.  Learn more

Interactive Top-Hat by Reconstruction
Add-on How-to

Interactive Top-Hat by Reconstruction

XPand module

3 Jul 2020 - This module provides an interactive Top-Hat segmentation that prevents the segmentation of "false positive" porosity on the edges.  Learn more

Cracks and Cavities Segmentation in CT Data
Add-on

Cracks and Cavities Segmentation in CT Data

Recipe (hxrecipe), Data

21 Oct 2019 - This recipe is useful to segment data with cracks, pores, or cavities.  Learn more

Refine Surface
Add-on

Refine Surface

XPand module

16 Oct 2019 - This module refines a surface.  Learn more

Recipe Sequencer
Add-on

Recipe Sequencer

Recipe (hxrecipe), XPand module, Data

14 Oct 2019 - Module for sequencing a recipe on each individual isolated label from a label field.  Learn more

Getting Started with Deep Learning Training for Image Segmentation
Add-on

Getting Started with Deep Learning Training for Image Segmentation

Deep learning model, Project (hx, pgo), Data

27 Jun 2019 - Model and companion project for the Deep Learning tutorial.  Learn more