Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software

Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
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Using Tcl Command Module for Multi-File OBJ Export NEW
Add-on How-to

Using Tcl Command Module for Multi-File OBJ Export

Tcl, Project (hx, pgo)

7 Sep 2021 - The Tcl Command Module makes it easy to export the surfaces of single objects from a multi-object surface as OBJ (Wavefront) files.

Split and Merge Segments
Add-on How-to

Split and Merge Segments

XPand module

29 Jun 2021 - The Split and Merge Segments module merges the two most representative segments at the intersection points of a graph structure and detaches the others.

Browse TensorBoard of old Deep Learning Training sessions
Add-on

Browse TensorBoard of old Deep Learning Training sessions

Deep learning model, Python (pyscro)

21 May 2021 - This Xtra proposes a module allowing you to browse TensorBoard logs from previous Deep Learning Training sessions.

Add Data To Point Cloud
Add-on

Add Data To Point Cloud

Python (pyscro)

29 Mar 2021 - AddDataToPointCloud writes data defined on mesh-nodes into a point-cloud with equal number of points. Together with the Xtra "PointCloudToSpreadsheet", the module can e.g. be used to export the results created by the module Surface Distance.

Getting Started with Flatten Module
Add-on How-to

Getting Started with Flatten Module

Project (hx, pgo), Demo

8 Mar 2021 - This tutorial demonstrates use of the Flatten experimental module to create interactive contours by defining the unfolding surface while respecting the constraints of the module inputs.

Efficient Graph-based 2D Image Segmentation
Add-on

Efficient Graph-based 2D Image Segmentation

XPand module

12 Feb 2021 - This Xtra implements efficient graph-based image segmentation by Felzenszwalb and Huttenlocher.

Segmentation of pathological osteocytes present in an undecalcified piece of bone from mice using Amira2D
Add-on

Segmentation of pathological osteocytes present in an undecalcified piece of bone from mice using Amira2D

Recipe ISP (hxisp,a2d)

3 Jul 2020 - This is a workflow to segment out osteocytes present in mouse bone sample using Amira2D

Extracting and Visualizing Local Statistics from Fibrous Materials
Add-on How-to

Extracting and Visualizing Local Statistics from Fibrous Materials

Project (hx, pgo)

3 Jul 2020 - This XTRA entry discusses the application of the “Spatial Graph Local Statistics” to extract statistical information from traced fibers in a fibrous material. The sample is 50% glass fiber-reinforced polymer (GFRP), courtesy of EMS Grivory.