High Content Screening Plate Manager
Python (pyscro), Tcl
13 May 2022 - Load, visualize, and process multi-channel fields from Thermo Scientific CellInsight CX5, CX7 LED, and CX7 LZR HCA instruments and HCS Studio software. Learn more
How to Segment Cavities Using the Compute Ambient Occlusion Module
Demo
12 Apr 2022 - This tutorial demonstrates how to segment pores or cavities using the Compute Ambient Occlusion module. Learn more
How to Perform Trabecular and Cortical Bone Segmentation
Demo
12 Apr 2022 - This tutorial demonstrates how to use the Compute Ambient Occlusion module to perform the segmentation of trabecular and cortical bone, as well as of the pore space, and then how to use the Arithmetic module to aggregate those results in one label field. Learn more
How to Use the Surface View Module and Create Elaborate Surface Renderings
Demo
30 Dec 2021 - This short video demonstrates the basic use of the Surface View module, and how to combine several Surface View modules to create elaborate renderings. Learn more
Tcl
18 Nov 2021 - Module Mask Map By Molecule lets you mask an EM map of a macro molecule by an atomic model of the entire or partial molecule. This can be useful when validating EM maps from SPA with published models from the Protein Data Bank. Learn more
How to Set the Colormap for Ortho Slice and Volume Rendering
Demo
18 Nov 2021 - This tutorial is an introduction to the basic principle and use of colormaps. Learn more
How to Use the Image Stack Processing (ISP) Workroom
Demo
14 Sep 2021 - This tutorial demonstrates how to use the ISP workroom, an intuitive 2D workroom for automating image processing workflows in 3D. Learn more
How to Overlay Images Using the Color Wash Module
Demo
14 Sep 2021 - This short video demonstrates how to use the Color Wash module to overlay label colors onto a greyscale image. Learn more
How to Register and Merge Images
Demo
14 Sep 2021 - This short tutorial demonstrates how to use the Register Images and Merge modules to align and merge two images. Learn more
How to Use the Transform Editor
Demo
14 Sep 2021 - This tutorial introduces the concept of geometric transformation in Amira-Avizo and demonstrates data alignment with the Transform Editor. Learn more
How to Create a Custom Label Colormap
Demo
14 Sep 2021 - This short video explains how to create and export a label colormap from the Segmentation Editor. Learn more
How to Change the Label Colormap to Display a Label Field
Demo
14 Sep 2021 - This short video explains how to set an appropriate colormap for label fields with a large number of labels. Learn more
How to Edit a Colormap from the Colormap Editor
Demo
14 Sep 2021 - This tutorial demonstrates how to use the Colormap Editor. Learn more
Demo
14 Sep 2021 - This short tutorial presents the different options to save a project. Learn more
Python (pyscro), Project (hx, pgo)
29 Mar 2021 - The Extract Oriented Labels module extracts every label from the input label image, and resamples each image along its own main orientations (or eigenvectors). Learn more
Tcl
8 Mar 2021 - This Xtra contains a script module to fit molecular models to density maps, a process frequently called "docking". Learn more
Image Segmentation Evaluation Using Standard Metrics (Python)
Python (pyscro), Project (hx, pgo)
8 Mar 2021 - Segmentation evaluation using standard precision, and recall metrics for comparing two segmentation labels. Learn more
Component Verification Using X-ray Computed Tomography and CAD Comparison
Demo, Data, Misc
3 Mar 2021 - The following video and training material uses an additively manufactured con rod to demonstrate how the surface profile generated from X-ray CT data can be compared to the original component CAD design. Learn more
Demo, Misc
24 Feb 2021 - This video tutorial demonstrates how to deal with visualization of large datasets. Learn more
How to Set Up Two-Sided Clipping
Demo
15 Feb 2021 - This tutorial explains how to set up two-sided clipping in order to transition between two visualizations of data. Learn more
How to Use Camera Orbit and Animate a Rotation
Demo
15 Feb 2021 - This tutorial explains how to use the Camera Orbit module, and then animate the rotation around an object in the Animation Director. Learn more