Recipe (hxrecipe), Recipe ISP, IVP, A2D, Deep learning model, Python (pyscro), Tcl, XPand module, Project (hx, pgo), Template, Demo, Data, Misc
22 Dec 2022 - The Xtras Installer is a tool that provides an easy way to install resources from the Xtra Library on to your local machine. Learn more
AI Assisted Tool for CryoEM Segmentation
Demo, Data
28 Nov 2022 - Here we provide a tutorial to interactively segment a cellular cryo-electron tomography image using the AI assisted segmentation tool of the Segmentation+ workroom. Learn more
Divide Full Data Volume into Defined Sub-Volume Blocks for Label Analysis
Recipe (hxrecipe), Project (hx, pgo), Demo
1 Sep 2022 - This Xtra demonstrates how to use the Arithmetic module to divide a whole volume data into defined sub-volume blocks and then perform label analysis on the blocks. Learn more
How to Install the Deep Learning Python Environment
Python (pyscro), Demo, Misc
29 Jul 2022 - Two videos explain how to install the dependencies needed to use Deep Learning within Amira 3D, Avizo 3D, or Pergeos. One covers the standard install and the other is for users without an internet connection. Learn more
How to Calculate Surface Area of a Custom ROI
Demo, Data
29 Jul 2022 - This tutorial elaborates how to draw a region of interest on a surface. With this ROI, you can calculate its surface area. Learn more
Demo
29 Jul 2022 - Three approaches are shown for extracting a surface and measuring the surface area of its geometry. Learn more
Object Separation using Random-Walk Distance Map
Recipe ISP, IVP, A2D, Demo, Data
3 Jun 2022 - Recipe utilizing an object separation workflow relying on the Random-Walk Distance Map. It is more robust than Separate Object for noisy segmentation or non-spherical shapes. Learn more
Bone Segmentation Workflow for Murine Hindpaw
Recipe ISP, IVP, A2D, Demo, Data
28 Apr 2022 - Semi-automatic workflow and recipe for high-throughput bone segmentation of murine hindpaw micro-CT datasets. Learn more
How to Segment Cavities Using the Compute Ambient Occlusion Module
Demo
12 Apr 2022 - This tutorial demonstrates how to segment pores or cavities using the Compute Ambient Occlusion module. Learn more
How to Perform Trabecular and Cortical Bone Segmentation
Demo
12 Apr 2022 - This tutorial demonstrates how to use the Compute Ambient Occlusion module to perform the segmentation of trabecular and cortical bone, as well as of the pore space, and then how to use the Arithmetic module to aggregate those results in one label field. Learn more
How to Use the Surface View Module and Create Elaborate Surface Renderings
Demo
30 Dec 2021 - This short video demonstrates the basic use of the Surface View module, and how to combine several Surface View modules to create elaborate renderings. Learn more
Differential Interference Contrast (DIC) Image Segmentation and Quantification using Deep Learning
Recipe (hxrecipe), Deep learning model, Demo
18 Nov 2021 - This workflow uses deep learning to segment images obtained by Differential Interference Contrast (DIC) microscopy. Nuclei and mitochondria are segmented and counted cell per cell. Learn more
Porosity Volume Fraction Analysis
Project (hx, pgo), Demo, Data
18 Nov 2021 - This tutorial demonstrates the steps to quantify porosity volume fraction and distribution. Learn more
Tcl, Demo
18 Nov 2021 - This module can be used to facilitate the alignment of datasets using pairs of landmarks. The video tutorial demonstrates this technique. Learn more
Inter Time Steps Recipe Player
Recipe (hxrecipe), Python (pyscro), Project (hx, pgo), Demo, Data
18 Nov 2021 - The Inter Time Steps Recipe Player module executes a two-input recipe to a specific pair of two successive time steps of a time series dataset, or to all its pairs of two successive time steps. Learn more
CMake Usage to Create XPand C++ API Modules
Demo
18 Nov 2021 - Starting with version 2021.2, the use of CMake is required to create solutions that implement the Amira Avizo 3D Pro extension modules with the XPand C ++ API. This video demonstrates what needs to be done to create a solution for MS Visual Studio. Learn more
How to Set the Colormap for Ortho Slice and Volume Rendering
Demo
18 Nov 2021 - This tutorial is an introduction to the basic principle and use of colormaps. Learn more
Incremental Digital Volume Correlation Tutorial
Demo
14 Sep 2021 - This tutorial explains how to use the new features of the Digital Volume Correlation extension to perform a series of incremental measurements. Learn more
How to Use the Image Recipe Designer workroom
Recipe ISP, IVP, A2D, Demo
14 Sep 2021 - This tutorial demonstrates how to use the Image Recipe Designer (formerly 'Image Stack Processing' or 'ISP') workroom, an intuitive 2D workroom for automating image processing workflows in 3D. Learn more
How to Overlay Images Using the Color Wash Module
Demo
14 Sep 2021 - This short video demonstrates how to use the Color Wash module to overlay label colors onto a greyscale image. Learn more
How to Register and Merge Images
Demo
14 Sep 2021 - This short tutorial demonstrates how to use the Register Images and Merge modules to align and merge two images. Learn more