Welcome to the Xtra Library for
Thermo Scientific Amira, Avizo and PerGeos Software

Below you will find a collection of add-ons (recipes, scripts, demos,…) that will help you improve your day-to-day use of Amira-Avizo and PerGeos Software and make you gain both time and efficiency.
Use the Search field to look for specific keywords related to your domain of interest. The different filters also help you target specific resources.

Facies Classification from Well Logs NEW
Add-on How-to

Facies Classification from Well Logs

Python (pyscro), Demo

3 Dec 2021 - Facies (rock type) classification from well logs using supervised machine learning algorithms.

Differential Interference Contrast (DIC) Image Segmentation and Quantification using Deep Learning NEW
Add-on How-to

Differential Interference Contrast (DIC) Image Segmentation and Quantification using Deep Learning

Recipe (hxrecipe), Deep learning model, Demo

18 Nov 2021 - This workflow uses deep learning to segment images obtained by Differential Interference Contrast (DIC) microscopy. Nuclei and mitochondria are segmented and counted cell per cell.

Porosity Volume Fraction Analysis NEW
Add-on How-to

Porosity Volume Fraction Analysis

Project (hx, pgo), Demo, Data

18 Nov 2021 - This tutorial demonstrates the steps to quantify porosity volume fraction and distribution.

Landmark based Data Alignment NEW
Add-on How-to

Landmark based Data Alignment

Tcl, Demo

18 Nov 2021 - This module can be used to facilitate the alignment of datasets using pairs of landmarks. The video tutorial demonstrates this technique.

Inter Time Steps Recipe Player NEW
Add-on How-to

Inter Time Steps Recipe Player

Recipe (hxrecipe), Python (pyscro), Project (hx, pgo), Demo, Data

18 Nov 2021 - The Inter Time Steps Recipe Player module executes a two-input recipe to a specific pair of two successive time steps of a time series dataset, or to all its pairs of two successive time steps.

CMake Usage to Create XPand C++ API Modules NEW
How-to

CMake Usage to Create XPand C++ API Modules

Demo

18 Nov 2021 - Starting with version 2021.2, the use of CMake is required to create solutions that implement the Amira Avizo 3D Pro extension modules with the XPand C ++ API. This video demonstrates what needs to be done to create a solution for MS Visual Studio.

How to Set the Colormap for Ortho Slice and Volume Rendering NEW
How-to

How to Set the Colormap for Ortho Slice and Volume Rendering

Demo

18 Nov 2021 - This tutorial is an introduction to the basic principle and use of colormaps.

How to Create a Particles Segmentation Recipe in Avizo2D Software using its ISP Workroom NEW
How-to

How to Create a Particles Segmentation Recipe in Avizo2D Software using its ISP Workroom

Demo

18 Nov 2021 - This tutorial demonstrates how to use the ISP workroom in Avizo2D software to create and run a recipe for particles segmentation.

Incremental Digital Volume Correlation Tutorial NEW
How-to

Incremental Digital Volume Correlation Tutorial

Demo

14 Sep 2021 - This tutorial explains how to use the new features of the Digital Volume Correlation extension to perform a series of incremental measurements.

How to Use the Image Stack Processing (ISP) Workroom NEW
How-to

How to Use the Image Stack Processing (ISP) Workroom

Demo

14 Sep 2021 - This tutorial demonstrates how to use the ISP workroom, an intuitive 2D workroom for automating image processing workflows in 3D.

How to Overlay Images Using the Color Wash Module NEW
How-to

How to Overlay Images Using the Color Wash Module

Demo

14 Sep 2021 - This short video demonstrates how to use the Color Wash module to overlay label colors onto a greyscale image.

How to Register and Merge Images NEW
How-to

How to Register and Merge Images

Demo

14 Sep 2021 - This short tutorial demonstrates how to use the Register Images and Merge modules to align and merge two images.

How to Use the Transform Editor NEW
How-to

How to Use the Transform Editor

Demo

14 Sep 2021 - This tutorial introduces the concept of geometric transformation in Amira-Avizo and demonstrates data alignment with the Transform Editor.

How to Create a Custom Label Colormap NEW
How-to

How to Create a Custom Label Colormap

Demo

14 Sep 2021 - This short video explains how to create and export a label colormap from the Segmentation Editor.

How to Change the Label Colormap to Display a Label Field NEW
How-to

How to Change the Label Colormap to Display a Label Field

Demo

14 Sep 2021 - This short video explains how to set an appropriate colormap for label fields with a large number of labels.

How to Edit a Colormap from the Colormap Editor NEW
How-to

How to Edit a Colormap from the Colormap Editor

Demo

14 Sep 2021 - This tutorial demonstrates how to use the Colormap Editor.

How to Save a Project NEW
How-to

How to Save a Project

Demo

14 Sep 2021 - This short tutorial presents the different options to save a project.

More Resources on Amira-Avizo Learning Center YouTube Playlist
How-to

More Resources on Amira-Avizo Learning Center YouTube Playlist

Demo, Misc

4 Jun 2021 - This Xtra provides links to Amira-Avizo Learning Center YouTube playlist.

Getting Started with Flatten Module
Add-on How-to

Getting Started with Flatten Module

Project (hx, pgo), Demo

8 Mar 2021 - This tutorial demonstrates use of the Flatten experimental module to create interactive contours by defining the unfolding surface while respecting the constraints of the module inputs.

Component Verification Using X-ray Computed Tomography and CAD Comparison
How-to

Component Verification Using X-ray Computed Tomography and CAD Comparison

Demo, Data, Misc

3 Mar 2021 - The following video and training material uses an additively manufactured con rod to demonstrate how the surface profile generated from X-ray CT data can be compared to the original component CAD design.

Large Data Visualization
Add-on How-to

Large Data Visualization

Demo, Misc

24 Feb 2021 - This video tutorial demonstrates how to deal with visualization of large datasets.