Trabecular Segmentation Workflow for Murine Tibial Bone
Add-on How-to

Trabecular Segmentation Workflow for Murine Tibial Bone

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

11 Dec 2023 - Here we provide a workflow to easily obtain the segmentation of trabecular bones.  Learn more

AI Assisted Tool for CryoEM Segmentation
How-to

AI Assisted Tool for CryoEM Segmentation

Demo, Data

28 Nov 2022 - Here we provide a tutorial to interactively segment a cellular cryo-electron tomography image using the AI assisted segmentation tool of the Segmentation+ workroom.  Learn more

How to Calculate Surface Area of a Custom ROI
How-to

How to Calculate Surface Area of a Custom ROI

Demo, Data

29 Jul 2022 - This tutorial elaborates how to draw a region of interest on a surface. With this ROI, you can calculate its surface area.  Learn more

Xtras Installer for Amira-Avizo 2023.1 and Prior
Add-on

Xtras Installer for Amira-Avizo 2023.1 and Prior

Recipe (hxrecipe), Recipe ISP, IVP, A2D, Deep learning model, Python (pyscro), Tcl, XPand module, Project (hx, pgo), Template, Demo, Data, Misc

30 Jun 2022 - The Xtras Installer is a tool that provides an easy way to install resources from the Xtra Library on to your local machine.  Learn more

Object Separation using Random-Walk Distance Map
Add-on

Object Separation using Random-Walk Distance Map

Recipe ISP, IVP, A2D, Demo, Data

3 Jun 2022 - Recipe utilizing an object separation workflow relying on the Random-Walk Distance Map. It is more robust than Separate Object for noisy segmentation or non-spherical shapes.  Learn more

Bone Segmentation Workflow for Murine Hindpaw
Add-on How-to

Bone Segmentation Workflow for Murine Hindpaw

Recipe ISP, IVP, A2D, Demo, Data

28 Apr 2022 - Semi-automatic workflow and recipe for high-throughput bone segmentation of murine hindpaw micro-CT datasets.  Learn more

Porosity Volume Fraction Analysis
Add-on How-to

Porosity Volume Fraction Analysis

Project (hx, pgo), Demo, Data

18 Nov 2021 - This tutorial demonstrates the steps to quantify porosity volume fraction and distribution.  Learn more

Inter Time Steps Recipe Player
Add-on How-to

Inter Time Steps Recipe Player

Recipe (hxrecipe), Python (pyscro), Project (hx, pgo), Demo, Data

18 Nov 2021 - The Inter Time Steps Recipe Player module executes a two-input recipe to a specific pair of two successive time steps of a time series dataset, or to all its pairs of two successive time steps.  Learn more

Xplore5D Tutorial Data
How-to

Xplore5D Tutorial Data

Data

8 Jul 2021 - This Xtra provides the data used in the tutorials for the Xplore5D extension, available in Amira-Avizo 2021.1  Learn more

Component Verification Using X-ray Computed Tomography and CAD Comparison
How-to

Component Verification Using X-ray Computed Tomography and CAD Comparison

Demo, Data, Misc

3 Mar 2021 - The following video and training material uses an additively manufactured con rod to demonstrate how the surface profile generated from X-ray CT data can be compared to the original component CAD design.  Learn more

Multi-Component Analysis of X-ray Computed Tomography Datasets
Add-on How-to

Multi-Component Analysis of X-ray Computed Tomography Datasets

Recipe (hxrecipe), Project (hx, pgo), Demo, Data, Misc

4 Jan 2021 - The following videos and training material detail the steps taken to automate the analysis of multiple parts in a single X-ray CT volume.  Learn more

Analysis of X-ray CT Calibration Spheres using the Metrology Workroom
How-to

Analysis of X-ray CT Calibration Spheres using the Metrology Workroom

Demo, Data, Misc

4 Jan 2021 - This video presents how to use the Metrology workroom to analyze calibration spheres used in X-ray Computed Tomography.  Learn more

Thresholding From Mean
Add-on How-to

Thresholding From Mean

Python (pyscro), Data

4 Jan 2021 - This module performs an adaptive global thresholding of the input image by computing a deviation from the mean of its grayscale values.  Learn more

Relative Area Fraction for Amira-Avizo2D
Add-on How-to

Relative Area Fraction for Amira-Avizo2D

Recipe ISP, IVP, A2D, Python (pyscro), Data, Misc

5 Oct 2020 - This Xtra provides a module to help compute the area fraction of a label over the area of another label in Amira-Avizo2D.  Learn more

XFiber Automation
Add-on

XFiber Automation

Tcl, Project (hx, pgo), Data

17 Jun 2020 - To make use of XFiber, the user usually needs to input many parameters. This package provides 2 tools to ease Xfiber process by presetting Cylinder Correlation and Auto Trace Correlation modules values.  Learn more

Molar Segmentation Using Watershed, Top-Hat, and Surface Generation
Add-on How-to

Molar Segmentation Using Watershed, Top-Hat, and Surface Generation

Project (hx, pgo), Demo, Data

11 May 2020 - Data, tutorial, and complete project for segmenting a CT-scanned human molar artifact. The tutorial and project cover advanced image segmentation and surface generation.  Learn more

2D SEM  (White) Grain Segmentation
Add-on

2D SEM (White) Grain Segmentation

Recipe (hxrecipe), Data

21 Oct 2019 - This recipe segments and calculate the physical attributes of the white grains in the 2D SEM image  Learn more

Random Forests for Multiclass Segmentation using Python API in PerGeos
Add-on

Random Forests for Multiclass Segmentation using Python API in PerGeos

Python (pyscro), Project (hx, pgo), Data

21 Oct 2019 - Simple demonstration of feature computation where the feature vector contains intensity and 2D eigenvalues (X & Y). This example uses random forests implementation from the sklearn package.  Learn more

Length Distribution Analysis
Add-on How-to

Length Distribution Analysis

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

21 Oct 2019 - This tutorial demonstrated how to quantify thickness distribution along the length  Learn more

Porosity Clustering Analysis and Distance to Surface
Add-on How-to

Porosity Clustering Analysis and Distance to Surface

Recipe (hxrecipe), Project (hx, pgo), Demo, Data

21 Oct 2019 - This tutorial demonstrates the steps necessary to quantify porosity distribution and perform a pore distance to surface analysis.  Learn more

Cracks and Cavities Segmentation in CT Data
Add-on

Cracks and Cavities Segmentation in CT Data

Recipe (hxrecipe), Data

21 Oct 2019 - This recipe is useful to segment data with cracks, pores, or cavities.  Learn more